Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.35■■□□□ 1.01
Cdk9Q99J95 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdk9Q99J95 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdk9Q99J95 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdk9Q99J95 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.34■■□□□ 1.01
Cdk9Q99J95 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.34■■□□□ 1.01
Cdk9Q99J95 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdk9Q99J95 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.33■■□□□ 1.01
Cdk9Q99J95 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Cdk9Q99J95 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdk9Q99J95 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdk9Q99J95 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cdk9Q99J95 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cdk9Q99J95 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Cdk9Q99J95 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.31■■□□□ 1
Cdk9Q99J95 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.31■■□□□ 1
Cdk9Q99J95 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cdk9Q99J95 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdk9Q99J95 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdk9Q99J95 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdk9Q99J95 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Cdk9Q99J95 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Cdk9Q99J95 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cdk9Q99J95 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cdk9Q99J95 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cdk9Q99J95 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cdk9Q99J95 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cdk9Q99J95 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.29■■□□□ 1
Cdk9Q99J95 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.29■■□□□ 1
Cdk9Q99J95 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cdk9Q99J95 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Cdk9Q99J95 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.28■■□□□ 1
Cdk9Q99J95 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdk9Q99J95 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Cdk9Q99J95 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdk9Q99J95 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdk9Q99J95 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Cdk9Q99J95 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdk9Q99J95 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdk9Q99J95 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.27■■□□□ 1
Cdk9Q99J95 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdk9Q99J95 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdk9Q99J95 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Cdk9Q99J95 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Cdk9Q99J95 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Cdk9Q99J95 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdk9Q99J95 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdk9Q99J95 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
Cdk9Q99J95 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdk9Q99J95 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdk9Q99J95 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdk9Q99J95 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Mir3960-201ENSMUST00000198213 73 ntBASIC21.24■□□□□ 0.99
Cdk9Q99J95 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Terc-201ENSMUST00000082862 423 ntBASIC21.24■□□□□ 0.99
Cdk9Q99J95 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.24■□□□□ 0.99
Cdk9Q99J95 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdk9Q99J95 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Cdk9Q99J95 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.23■□□□□ 0.99
Cdk9Q99J95 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.23■□□□□ 0.99
Cdk9Q99J95 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdk9Q99J95 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Cdk9Q99J95 Gm34220-201ENSMUST00000223001 2709 ntBASIC21.22■□□□□ 0.99
Cdk9Q99J95 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdk9Q99J95 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cdk9Q99J95 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
Cdk9Q99J95 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Cdk9Q99J95 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Cdk9Q99J95 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms