Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21.38■■□□□ 1.01
Rpa1Q8VEE4 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rpa1Q8VEE4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rpa1Q8VEE4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rpa1Q8VEE4 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
Rpa1Q8VEE4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Terc-201ENSMUST00000082862 423 ntBASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.36■■□□□ 1.01
Rpa1Q8VEE4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Rpa1Q8VEE4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.34■■□□□ 1.01
Rpa1Q8VEE4 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.33■■□□□ 1.01
Rpa1Q8VEE4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.33■■□□□ 1
Rpa1Q8VEE4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1
Rpa1Q8VEE4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Rpa1Q8VEE4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.32■■□□□ 1
Rpa1Q8VEE4 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.32■■□□□ 1
Rpa1Q8VEE4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpa1Q8VEE4 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Mir3960-201ENSMUST00000198213 73 ntBASIC21.3■■□□□ 1
Rpa1Q8VEE4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpa1Q8VEE4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.3■■□□□ 1
Rpa1Q8VEE4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Rpa1Q8VEE4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rpa1Q8VEE4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Rpa1Q8VEE4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rpa1Q8VEE4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Rpa1Q8VEE4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rpa1Q8VEE4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rpa1Q8VEE4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rpa1Q8VEE4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rpa1Q8VEE4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rpa1Q8VEE4 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.27■■□□□ 1
Rpa1Q8VEE4 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Rpa1Q8VEE4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpa1Q8VEE4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rpa1Q8VEE4 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpa1Q8VEE4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms