Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
Ccdc28bQ8CEG5 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
Ccdc28bQ8CEG5 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28bQ8CEG5 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28bQ8CEG5 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc28bQ8CEG5 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc28bQ8CEG5 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ccdc28bQ8CEG5 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28bQ8CEG5 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc28bQ8CEG5 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Gm45364-201ENSMUST00000210883 159 ntBASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc28bQ8CEG5 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc28bQ8CEG5 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Gm8503-201ENSMUST00000118131 455 ntBASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc28bQ8CEG5 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Ccdc28bQ8CEG5 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Ccdc28bQ8CEG5 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc28bQ8CEG5 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc28bQ8CEG5 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28bQ8CEG5 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28bQ8CEG5 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28bQ8CEG5 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc28bQ8CEG5 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc28bQ8CEG5 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.9■□□□□ 0.94
Ccdc28bQ8CEG5 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28bQ8CEG5 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc28bQ8CEG5 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28bQ8CEG5 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28bQ8CEG5 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc28bQ8CEG5 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc28bQ8CEG5 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc28bQ8CEG5 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.89■□□□□ 0.93
Ccdc28bQ8CEG5 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.89■□□□□ 0.93
Ccdc28bQ8CEG5 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc28bQ8CEG5 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.88■□□□□ 0.93
Ccdc28bQ8CEG5 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc28bQ8CEG5 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms