Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 Gm10420-201ENSMUST00000121713 882 ntBASIC19.31■□□□□ 0.68
Cdh11P55288 Gm44428-201ENSMUST00000204474 874 ntBASIC19.31■□□□□ 0.68
Cdh11P55288 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.31■□□□□ 0.68
Cdh11P55288 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.31■□□□□ 0.68
Cdh11P55288 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdh11P55288 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdh11P55288 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdh11P55288 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
Cdh11P55288 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdh11P55288 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdh11P55288 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.28■□□□□ 0.68
Cdh11P55288 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.28■□□□□ 0.68
Cdh11P55288 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdh11P55288 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.27■□□□□ 0.68
Cdh11P55288 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.27■□□□□ 0.68
Cdh11P55288 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cdh11P55288 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cdh11P55288 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Cdh11P55288 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cdh11P55288 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Cdh11P55288 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.26■□□□□ 0.67
Cdh11P55288 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdh11P55288 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.25■□□□□ 0.67
Cdh11P55288 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdh11P55288 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.25■□□□□ 0.67
Cdh11P55288 Gm22567-201ENSMUST00000175542 342 ntBASIC19.25■□□□□ 0.67
Cdh11P55288 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdh11P55288 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cdh11P55288 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Cdh11P55288 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh11P55288 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh11P55288 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh11P55288 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh11P55288 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Cdh11P55288 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.24■□□□□ 0.67
Cdh11P55288 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Cdh11P55288 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.24■□□□□ 0.67
Cdh11P55288 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.24■□□□□ 0.67
Cdh11P55288 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh11P55288 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh11P55288 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.22■□□□□ 0.67
Cdh11P55288 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh11P55288 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh11P55288 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Cdh11P55288 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh11P55288 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh11P55288 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh11P55288 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.21■□□□□ 0.67
Cdh11P55288 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh11P55288 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Cdh11P55288 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh11P55288 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.2■□□□□ 0.66
Cdh11P55288 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Cdh11P55288 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.2■□□□□ 0.66
Cdh11P55288 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.2■□□□□ 0.66
Cdh11P55288 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh11P55288 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Cdh11P55288 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.19■□□□□ 0.66
Cdh11P55288 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh11P55288 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cdh11P55288 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh11P55288 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh11P55288 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.19■□□□□ 0.66
Cdh11P55288 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Cdh11P55288 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh11P55288 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cdh11P55288 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh11P55288 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cdh11P55288 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh11P55288 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh11P55288 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.17■□□□□ 0.66
Cdh11P55288 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh11P55288 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh11P55288 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms