Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Usp40Q8BWR4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
Usp40Q8BWR4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC29.89■■■□□ 2.37
Usp40Q8BWR4 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Usp40Q8BWR4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC29.88■■■□□ 2.37
Usp40Q8BWR4 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Usp40Q8BWR4 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Usp40Q8BWR4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Usp40Q8BWR4 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Usp40Q8BWR4 Gm22238-201ENSMUST00000175222 88 ntBASIC29.85■■■□□ 2.37
Usp40Q8BWR4 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Usp40Q8BWR4 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC29.85■■■□□ 2.37
Usp40Q8BWR4 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
Usp40Q8BWR4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC29.84■■■□□ 2.37
Usp40Q8BWR4 Gm10399-202ENSMUST00000202768 748 ntBASIC29.84■■■□□ 2.37
Usp40Q8BWR4 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
Usp40Q8BWR4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Usp40Q8BWR4 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Usp40Q8BWR4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
Usp40Q8BWR4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Usp40Q8BWR4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
Usp40Q8BWR4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Usp40Q8BWR4 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Usp40Q8BWR4 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC29.8■■■□□ 2.36
Usp40Q8BWR4 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Usp40Q8BWR4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Usp40Q8BWR4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC29.77■■■□□ 2.36
Usp40Q8BWR4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Usp40Q8BWR4 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
Usp40Q8BWR4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC29.76■■■□□ 2.36
Usp40Q8BWR4 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Usp40Q8BWR4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Usp40Q8BWR4 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Usp40Q8BWR4 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Usp40Q8BWR4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Usp40Q8BWR4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC29.74■■■□□ 2.35
Usp40Q8BWR4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Usp40Q8BWR4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Usp40Q8BWR4 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Usp40Q8BWR4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Usp40Q8BWR4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
Usp40Q8BWR4 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Usp40Q8BWR4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Usp40Q8BWR4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Usp40Q8BWR4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
Usp40Q8BWR4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
Usp40Q8BWR4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Usp40Q8BWR4 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Usp40Q8BWR4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Usp40Q8BWR4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Usp40Q8BWR4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Usp40Q8BWR4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC29.69■■■□□ 2.34
Usp40Q8BWR4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.69■■■□□ 2.34
Usp40Q8BWR4 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Gm10620-201ENSMUST00000098379 1332 ntBASIC29.68■■■□□ 2.34
Usp40Q8BWR4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Usp40Q8BWR4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp40Q8BWR4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
Usp40Q8BWR4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
Usp40Q8BWR4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Usp40Q8BWR4 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms