Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
Trim56Q80VI1 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC25.56■■□□□ 1.68
Trim56Q80VI1 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
Trim56Q80VI1 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC25.56■■□□□ 1.68
Trim56Q80VI1 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC25.55■■□□□ 1.68
Trim56Q80VI1 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Trim56Q80VI1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Trim56Q80VI1 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC25.55■■□□□ 1.68
Trim56Q80VI1 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
Trim56Q80VI1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trim56Q80VI1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trim56Q80VI1 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC25.53■■□□□ 1.68
Trim56Q80VI1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trim56Q80VI1 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trim56Q80VI1 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC25.53■■□□□ 1.68
Trim56Q80VI1 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trim56Q80VI1 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trim56Q80VI1 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Trim56Q80VI1 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trim56Q80VI1 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Trim56Q80VI1 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
Trim56Q80VI1 Gm5522-201ENSMUST00000189483 1242 ntBASIC25.51■■□□□ 1.67
Trim56Q80VI1 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
Trim56Q80VI1 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trim56Q80VI1 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Trim56Q80VI1 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Trim56Q80VI1 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Gm28536-201ENSMUST00000190971 1317 ntBASIC25.49■■□□□ 1.67
Trim56Q80VI1 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Trim56Q80VI1 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim56Q80VI1 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim56Q80VI1 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim56Q80VI1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
Trim56Q80VI1 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim56Q80VI1 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trim56Q80VI1 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trim56Q80VI1 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trim56Q80VI1 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
Trim56Q80VI1 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trim56Q80VI1 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trim56Q80VI1 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Trim56Q80VI1 Gm15546-201ENSMUST00000122095 826 ntBASIC25.45■■□□□ 1.66
Trim56Q80VI1 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trim56Q80VI1 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC25.45■■□□□ 1.66
Trim56Q80VI1 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trim56Q80VI1 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trim56Q80VI1 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trim56Q80VI1 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trim56Q80VI1 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Trim56Q80VI1 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Trim56Q80VI1 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Trim56Q80VI1 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.42■■□□□ 1.66
Trim56Q80VI1 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trim56Q80VI1 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
Trim56Q80VI1 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trim56Q80VI1 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trim56Q80VI1 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trim56Q80VI1 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Gm16464-201ENSMUST00000117815 1095 ntBASIC25.41■■□□□ 1.66
Trim56Q80VI1 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Trim56Q80VI1 Gm15820-201ENSMUST00000201566 728 ntBASIC25.4■■□□□ 1.66
Trim56Q80VI1 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC25.4■■□□□ 1.66
Trim56Q80VI1 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC25.4■■□□□ 1.66
Trim56Q80VI1 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trim56Q80VI1 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.39■■□□□ 1.66
Trim56Q80VI1 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
Trim56Q80VI1 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms