Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav6-3Q5R1E6 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Trav6-3Q5R1E6 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav6-3Q5R1E6 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Trav6-3Q5R1E6 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav6-3Q5R1E6 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav6-3Q5R1E6 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC17.25■□□□□ 0.35
Trav6-3Q5R1E6 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Trav6-3Q5R1E6 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Gm16437-201ENSMUST00000025669 507 ntBASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav6-3Q5R1E6 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Trav6-3Q5R1E6 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-3Q5R1E6 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-3Q5R1E6 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-3Q5R1E6 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-3Q5R1E6 Gm11687-201ENSMUST00000118911 886 ntBASIC17.21■□□□□ 0.35
Trav6-3Q5R1E6 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-3Q5R1E6 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trav6-3Q5R1E6 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-3Q5R1E6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC17.2■□□□□ 0.34
Trav6-3Q5R1E6 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-3Q5R1E6 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-3Q5R1E6 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-3Q5R1E6 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trav6-3Q5R1E6 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 AC151971.4-201ENSMUST00000214717 704 ntBASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav6-3Q5R1E6 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Trav6-3Q5R1E6 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6-3Q5R1E6 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav6-3Q5R1E6 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav6-3Q5R1E6 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6-3Q5R1E6 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6-3Q5R1E6 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6-3Q5R1E6 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms