Protein–RNA interactions for Protein: Q3U466

Cln6, Ceroid-lipofuscinosis, neuronal 6, mousemouse

Predictions only

Length 308 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln6Q3U466 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cln6Q3U466 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cln6Q3U466 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.17■□□□□ 0.5
Cln6Q3U466 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.17■□□□□ 0.5
Cln6Q3U466 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cln6Q3U466 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cln6Q3U466 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cln6Q3U466 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cln6Q3U466 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Cln6Q3U466 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cln6Q3U466 Pkd1-207ENSMUST00000228550 1050 ntBASIC18.16■□□□□ 0.5
Cln6Q3U466 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cln6Q3U466 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Gm22567-201ENSMUST00000175542 342 ntBASIC18.15■□□□□ 0.5
Cln6Q3U466 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cln6Q3U466 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC18.15■□□□□ 0.5
Cln6Q3U466 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cln6Q3U466 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cln6Q3U466 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cln6Q3U466 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.14■□□□□ 0.49
Cln6Q3U466 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln6Q3U466 AC167019.3-201ENSMUST00000228225 1266 ntBASIC18.14■□□□□ 0.49
Cln6Q3U466 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln6Q3U466 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln6Q3U466 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln6Q3U466 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln6Q3U466 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln6Q3U466 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.13■□□□□ 0.49
Cln6Q3U466 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln6Q3U466 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln6Q3U466 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln6Q3U466 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Cln6Q3U466 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln6Q3U466 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln6Q3U466 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC18.12■□□□□ 0.49
Cln6Q3U466 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln6Q3U466 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln6Q3U466 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cln6Q3U466 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cln6Q3U466 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.11■□□□□ 0.49
Cln6Q3U466 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Cln6Q3U466 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Cln6Q3U466 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Cln6Q3U466 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln6Q3U466 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Cln6Q3U466 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cln6Q3U466 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
Cln6Q3U466 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC18.1■□□□□ 0.49
Cln6Q3U466 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln6Q3U466 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cln6Q3U466 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Cln6Q3U466 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.08■□□□□ 0.49
Cln6Q3U466 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.08■□□□□ 0.49
Cln6Q3U466 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cln6Q3U466 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.08■□□□□ 0.48
Cln6Q3U466 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
Cln6Q3U466 Gm9910-201ENSMUST00000195385 1550 ntBASIC18.08■□□□□ 0.48
Cln6Q3U466 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Cln6Q3U466 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cln6Q3U466 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cln6Q3U466 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Cln6Q3U466 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cln6Q3U466 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cln6Q3U466 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Cln6Q3U466 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cln6Q3U466 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cln6Q3U466 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cln6Q3U466 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cln6Q3U466 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC18.05■□□□□ 0.48
Cln6Q3U466 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cln6Q3U466 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cln6Q3U466 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cln6Q3U466 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms