Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm15820-201ENSMUST00000201566 728 ntBASIC19.92■□□□□ 0.78
Cdc40Q9DC48 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdc40Q9DC48 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdc40Q9DC48 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.92■□□□□ 0.78
Cdc40Q9DC48 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Cdc40Q9DC48 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdc40Q9DC48 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdc40Q9DC48 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.88■□□□□ 0.77
Cdc40Q9DC48 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdc40Q9DC48 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Cdc40Q9DC48 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.87■□□□□ 0.77
Cdc40Q9DC48 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Cdc40Q9DC48 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Cdc40Q9DC48 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Gm22567-201ENSMUST00000175542 342 ntBASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdc40Q9DC48 Gm13238-201ENSMUST00000117655 780 ntBASIC19.85■□□□□ 0.77
Cdc40Q9DC48 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.85■□□□□ 0.77
Cdc40Q9DC48 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cdc40Q9DC48 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Cdc40Q9DC48 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cdc40Q9DC48 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Cdc40Q9DC48 Gm45444-201ENSMUST00000211394 898 ntBASIC19.84■□□□□ 0.77
Cdc40Q9DC48 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cdc40Q9DC48 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cdc40Q9DC48 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.83■□□□□ 0.77
Cdc40Q9DC48 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cdc40Q9DC48 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cdc40Q9DC48 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cdc40Q9DC48 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Gm43566-201ENSMUST00000196851 808 ntBASIC19.82■□□□□ 0.76
Cdc40Q9DC48 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cdc40Q9DC48 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.81■□□□□ 0.76
Cdc40Q9DC48 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdc40Q9DC48 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Cdc40Q9DC48 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cdc40Q9DC48 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cdc40Q9DC48 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Cdc40Q9DC48 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdc40Q9DC48 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms