Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rnf220Q6PDX6 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf220Q6PDX6 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf220Q6PDX6 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf220Q6PDX6 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rnf220Q6PDX6 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Rnf220Q6PDX6 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rnf220Q6PDX6 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.33■□□□□ 0.84
Rnf220Q6PDX6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rnf220Q6PDX6 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf220Q6PDX6 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.32■□□□□ 0.84
Rnf220Q6PDX6 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf220Q6PDX6 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf220Q6PDX6 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rnf220Q6PDX6 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rnf220Q6PDX6 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.31■□□□□ 0.84
Rnf220Q6PDX6 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.31■□□□□ 0.84
Rnf220Q6PDX6 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rnf220Q6PDX6 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rnf220Q6PDX6 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Golph3-202ENSMUST00000226517 2359 ntBASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rnf220Q6PDX6 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf220Q6PDX6 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf220Q6PDX6 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf220Q6PDX6 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf220Q6PDX6 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rnf220Q6PDX6 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Rnf220Q6PDX6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.28■□□□□ 0.84
Rnf220Q6PDX6 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rnf220Q6PDX6 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.27■□□□□ 0.84
Rnf220Q6PDX6 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf220Q6PDX6 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.27■□□□□ 0.84
Rnf220Q6PDX6 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rnf220Q6PDX6 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.27■□□□□ 0.84
Rnf220Q6PDX6 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Rnf220Q6PDX6 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rnf220Q6PDX6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.83
Rnf220Q6PDX6 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Rnf220Q6PDX6 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rnf220Q6PDX6 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rnf220Q6PDX6 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Rnf220Q6PDX6 AC153962.1-201ENSMUST00000218530 1948 ntBASIC20.25■□□□□ 0.83
Rnf220Q6PDX6 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.25■□□□□ 0.83
Rnf220Q6PDX6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rnf220Q6PDX6 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rnf220Q6PDX6 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf220Q6PDX6 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf220Q6PDX6 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Rnf220Q6PDX6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Rnf220Q6PDX6 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf220Q6PDX6 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf220Q6PDX6 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf220Q6PDX6 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf220Q6PDX6 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf220Q6PDX6 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Rnf220Q6PDX6 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf220Q6PDX6 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms