Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col7a1Q63870 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col7a1Q63870 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.73■□□□□ 0.59
Col7a1Q63870 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Col7a1Q63870 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col7a1Q63870 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col7a1Q63870 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.73■□□□□ 0.59
Col7a1Q63870 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col7a1Q63870 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col7a1Q63870 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Col7a1Q63870 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col7a1Q63870 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col7a1Q63870 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col7a1Q63870 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col7a1Q63870 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.72■□□□□ 0.59
Col7a1Q63870 Gm27405-201ENSMUST00000184201 112 ntBASIC18.71■□□□□ 0.59
Col7a1Q63870 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col7a1Q63870 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col7a1Q63870 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col7a1Q63870 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col7a1Q63870 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col7a1Q63870 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.7■□□□□ 0.58
Col7a1Q63870 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.69■□□□□ 0.58
Col7a1Q63870 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Col7a1Q63870 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col7a1Q63870 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col7a1Q63870 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
Col7a1Q63870 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col7a1Q63870 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col7a1Q63870 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col7a1Q63870 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col7a1Q63870 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col7a1Q63870 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col7a1Q63870 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.68■□□□□ 0.58
Col7a1Q63870 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.68■□□□□ 0.58
Col7a1Q63870 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col7a1Q63870 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col7a1Q63870 Gm10399-202ENSMUST00000202768 748 ntBASIC18.67■□□□□ 0.58
Col7a1Q63870 Spcs1-204ENSMUST00000226782 949 ntBASIC18.67■□□□□ 0.58
Col7a1Q63870 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.67■□□□□ 0.58
Col7a1Q63870 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.67■□□□□ 0.58
Col7a1Q63870 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col7a1Q63870 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.67■□□□□ 0.58
Col7a1Q63870 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.67■□□□□ 0.58
Col7a1Q63870 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col7a1Q63870 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col7a1Q63870 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col7a1Q63870 Gm43017-201ENSMUST00000198296 752 ntBASIC18.66■□□□□ 0.58
Col7a1Q63870 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col7a1Q63870 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col7a1Q63870 Gm37179-201ENSMUST00000194862 823 ntBASIC18.66■□□□□ 0.58
Col7a1Q63870 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
Col7a1Q63870 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.65■□□□□ 0.58
Col7a1Q63870 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col7a1Q63870 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.65■□□□□ 0.58
Col7a1Q63870 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Col7a1Q63870 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col7a1Q63870 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Col7a1Q63870 AC164433.2-201ENSMUST00000226346 1701 ntBASIC18.64■□□□□ 0.57
Col7a1Q63870 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col7a1Q63870 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Col7a1Q63870 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col7a1Q63870 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col7a1Q63870 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col7a1Q63870 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col7a1Q63870 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col7a1Q63870 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col7a1Q63870 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col7a1Q63870 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col7a1Q63870 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.63■□□□□ 0.57
Col7a1Q63870 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col7a1Q63870 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Col7a1Q63870 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC18.62■□□□□ 0.57
Col7a1Q63870 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col7a1Q63870 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col7a1Q63870 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.61■□□□□ 0.57
Col7a1Q63870 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col7a1Q63870 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col7a1Q63870 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Col7a1Q63870 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col7a1Q63870 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col7a1Q63870 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.6■□□□□ 0.57
Col7a1Q63870 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.6■□□□□ 0.57
Col7a1Q63870 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col7a1Q63870 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.59■□□□□ 0.57
Col7a1Q63870 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.59■□□□□ 0.57
Col7a1Q63870 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
Col7a1Q63870 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms