Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Pcdha4O88689 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdha4O88689 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdha4O88689 Gm43566-201ENSMUST00000196851 808 ntBASIC24.26■■□□□ 1.47
Pcdha4O88689 Nsd1-206ENSMUST00000224918 1001 ntBASIC24.26■■□□□ 1.47
Pcdha4O88689 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
Pcdha4O88689 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdha4O88689 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdha4O88689 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdha4O88689 Gm13238-201ENSMUST00000117655 780 ntBASIC24.25■■□□□ 1.47
Pcdha4O88689 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdha4O88689 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdha4O88689 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdha4O88689 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
Pcdha4O88689 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC24.24■■□□□ 1.47
Pcdha4O88689 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdha4O88689 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdha4O88689 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdha4O88689 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdha4O88689 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdha4O88689 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdha4O88689 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdha4O88689 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdha4O88689 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Pcdha4O88689 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Pcdha4O88689 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdha4O88689 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Pcdha4O88689 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdha4O88689 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdha4O88689 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdha4O88689 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Pcdha4O88689 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Pcdha4O88689 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Pcdha4O88689 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
Pcdha4O88689 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC24.2■■□□□ 1.46
Pcdha4O88689 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdha4O88689 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdha4O88689 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdha4O88689 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdha4O88689 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdha4O88689 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC24.19■■□□□ 1.46
Pcdha4O88689 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Pcdha4O88689 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdha4O88689 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdha4O88689 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
Pcdha4O88689 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC24.17■■□□□ 1.46
Pcdha4O88689 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Pcdha4O88689 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24.17■■□□□ 1.46
Pcdha4O88689 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
Pcdha4O88689 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Pcdha4O88689 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.16■■□□□ 1.46
Pcdha4O88689 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdha4O88689 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC24.15■■□□□ 1.46
Pcdha4O88689 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdha4O88689 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Pcdha4O88689 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Pcdha4O88689 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC24.14■■□□□ 1.45
Pcdha4O88689 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Pcdha4O88689 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
Pcdha4O88689 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC24.14■■□□□ 1.45
Pcdha4O88689 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Pcdha4O88689 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Pcdha4O88689 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdha4O88689 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdha4O88689 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdha4O88689 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Pcdha4O88689 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdha4O88689 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdha4O88689 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdha4O88689 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
Pcdha4O88689 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdha4O88689 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdha4O88689 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC24.12■■□□□ 1.45
Pcdha4O88689 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdha4O88689 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdha4O88689 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdha4O88689 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Pcdha4O88689 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 115.7 ms