Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Trbv1A0A0B4J1G7 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trbv1A0A0B4J1G7 Gm9910-201ENSMUST00000195385 1550 ntBASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC16.85■□□□□ 0.29
Trbv1A0A0B4J1G7 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 AC153962.1-201ENSMUST00000218530 1948 ntBASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Trbv1A0A0B4J1G7 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
Trbv1A0A0B4J1G7 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trbv1A0A0B4J1G7 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 Gm4419-202ENSMUST00000226239 1431 ntBASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv1A0A0B4J1G7 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC16.82■□□□□ 0.28
Trbv1A0A0B4J1G7 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Gm4799-201ENSMUST00000095396 657 ntBASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv1A0A0B4J1G7 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Trbv1A0A0B4J1G7 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv1A0A0B4J1G7 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC16.79■□□□□ 0.28
Trbv1A0A0B4J1G7 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv1A0A0B4J1G7 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC16.79■□□□□ 0.28
Trbv1A0A0B4J1G7 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv1A0A0B4J1G7 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv1A0A0B4J1G7 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv1A0A0B4J1G7 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC16.78■□□□□ 0.28
Trbv1A0A0B4J1G7 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv1A0A0B4J1G7 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trbv1A0A0B4J1G7 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trbv1A0A0B4J1G7 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trbv1A0A0B4J1G7 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trbv1A0A0B4J1G7 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv1A0A0B4J1G7 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm13889-201ENSMUST00000099689 1386 ntBASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv1A0A0B4J1G7 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv1A0A0B4J1G7 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Trbv1A0A0B4J1G7 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms