Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Rnf220Q6PDX6 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf220Q6PDX6 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Rnf220Q6PDX6 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf220Q6PDX6 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf220Q6PDX6 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf220Q6PDX6 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf220Q6PDX6 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf220Q6PDX6 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rnf220Q6PDX6 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rnf220Q6PDX6 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Rnf220Q6PDX6 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rnf220Q6PDX6 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rnf220Q6PDX6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.43■□□□□ 0.86
Rnf220Q6PDX6 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf220Q6PDX6 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Rnf220Q6PDX6 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf220Q6PDX6 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf220Q6PDX6 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf220Q6PDX6 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Rnf220Q6PDX6 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.42■□□□□ 0.86
Rnf220Q6PDX6 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf220Q6PDX6 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Rnf220Q6PDX6 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Rnf220Q6PDX6 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rnf220Q6PDX6 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Rnf220Q6PDX6 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rnf220Q6PDX6 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Rnf220Q6PDX6 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf220Q6PDX6 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf220Q6PDX6 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
Rnf220Q6PDX6 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf220Q6PDX6 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Nkain2-201ENSMUST00000092602 558 ntBASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf220Q6PDX6 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf220Q6PDX6 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms