Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.37■□□□□ 0.85
Trim40Q3UWA4 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.37■□□□□ 0.85
Trim40Q3UWA4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim40Q3UWA4 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.37■□□□□ 0.85
Trim40Q3UWA4 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim40Q3UWA4 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim40Q3UWA4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim40Q3UWA4 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim40Q3UWA4 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim40Q3UWA4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.35■□□□□ 0.85
Trim40Q3UWA4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.35■□□□□ 0.85
Trim40Q3UWA4 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim40Q3UWA4 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim40Q3UWA4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.34■□□□□ 0.85
Trim40Q3UWA4 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim40Q3UWA4 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim40Q3UWA4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim40Q3UWA4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim40Q3UWA4 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trim40Q3UWA4 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.33■□□□□ 0.84
Trim40Q3UWA4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.33■□□□□ 0.84
Trim40Q3UWA4 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim40Q3UWA4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim40Q3UWA4 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim40Q3UWA4 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim40Q3UWA4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim40Q3UWA4 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Trim40Q3UWA4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim40Q3UWA4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim40Q3UWA4 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim40Q3UWA4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim40Q3UWA4 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim40Q3UWA4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Trim40Q3UWA4 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Trim40Q3UWA4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.25■□□□□ 0.83
Trim40Q3UWA4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim40Q3UWA4 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.24■□□□□ 0.83
Trim40Q3UWA4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim40Q3UWA4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim40Q3UWA4 Gm9939-201ENSMUST00000067161 1154 ntBASIC20.24■□□□□ 0.83
Trim40Q3UWA4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim40Q3UWA4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim40Q3UWA4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms