Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
Ddb1Q3U1J4 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ddb1Q3U1J4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC28.37■■■□□ 2.13
Ddb1Q3U1J4 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC28.37■■■□□ 2.13
Ddb1Q3U1J4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ddb1Q3U1J4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ddb1Q3U1J4 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ddb1Q3U1J4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC28.36■■■□□ 2.13
Ddb1Q3U1J4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddb1Q3U1J4 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddb1Q3U1J4 Gm45417-201ENSMUST00000209533 758 ntBASIC28.34■■■□□ 2.13
Ddb1Q3U1J4 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Ddb1Q3U1J4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Ddb1Q3U1J4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ddb1Q3U1J4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ddb1Q3U1J4 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ddb1Q3U1J4 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddb1Q3U1J4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddb1Q3U1J4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddb1Q3U1J4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddb1Q3U1J4 Gm10399-202ENSMUST00000202768 748 ntBASIC28.31■■■□□ 2.12
Ddb1Q3U1J4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddb1Q3U1J4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
Ddb1Q3U1J4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddb1Q3U1J4 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddb1Q3U1J4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC28.3■■■□□ 2.12
Ddb1Q3U1J4 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Ddb1Q3U1J4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddb1Q3U1J4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddb1Q3U1J4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
Ddb1Q3U1J4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ddb1Q3U1J4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Ddb1Q3U1J4 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddb1Q3U1J4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddb1Q3U1J4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddb1Q3U1J4 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddb1Q3U1J4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddb1Q3U1J4 Slc35b2-207ENSMUST00000226086 850 ntBASIC28.27■■■□□ 2.12
Ddb1Q3U1J4 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddb1Q3U1J4 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddb1Q3U1J4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Gm11847-201ENSMUST00000125165 1119 ntBASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ddb1Q3U1J4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.24■■■□□ 2.11
Ddb1Q3U1J4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC28.23■■■□□ 2.11
Ddb1Q3U1J4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ddb1Q3U1J4 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ddb1Q3U1J4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
Ddb1Q3U1J4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddb1Q3U1J4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddb1Q3U1J4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ddb1Q3U1J4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Ddb1Q3U1J4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Ddb1Q3U1J4 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC28.2■■■□□ 2.11
Ddb1Q3U1J4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC28.2■■■□□ 2.1
Ddb1Q3U1J4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Ddb1Q3U1J4 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC28.2■■■□□ 2.1
Ddb1Q3U1J4 Golgb1-201ENSMUST00000023534 498 ntBASIC28.2■■■□□ 2.1
Ddb1Q3U1J4 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Ddb1Q3U1J4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ddb1Q3U1J4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddb1Q3U1J4 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ddb1Q3U1J4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Ddb1Q3U1J4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC28.17■■■□□ 2.1
Ddb1Q3U1J4 Nsd1-206ENSMUST00000224918 1001 ntBASIC28.17■■■□□ 2.1
Ddb1Q3U1J4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ddb1Q3U1J4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ddb1Q3U1J4 AC153524.1-201ENSMUST00000220436 1935 ntBASIC28.16■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 1103.8 ms