Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21■□□□□ 0.95
Col28a1Q2UY11 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col28a1Q2UY11 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col28a1Q2UY11 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col28a1Q2UY11 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col28a1Q2UY11 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col28a1Q2UY11 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col28a1Q2UY11 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.98■□□□□ 0.95
Col28a1Q2UY11 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col28a1Q2UY11 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Col28a1Q2UY11 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.98■□□□□ 0.95
Col28a1Q2UY11 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col28a1Q2UY11 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Col28a1Q2UY11 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Col28a1Q2UY11 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col28a1Q2UY11 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
Col28a1Q2UY11 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.96■□□□□ 0.95
Col28a1Q2UY11 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col28a1Q2UY11 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col28a1Q2UY11 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col28a1Q2UY11 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col28a1Q2UY11 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col28a1Q2UY11 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.94■□□□□ 0.94
Col28a1Q2UY11 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col28a1Q2UY11 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col28a1Q2UY11 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col28a1Q2UY11 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col28a1Q2UY11 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col28a1Q2UY11 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col28a1Q2UY11 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Col28a1Q2UY11 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col28a1Q2UY11 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col28a1Q2UY11 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col28a1Q2UY11 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.89■□□□□ 0.93
Col28a1Q2UY11 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col28a1Q2UY11 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Col28a1Q2UY11 Gm22567-201ENSMUST00000175542 342 ntBASIC20.89■□□□□ 0.93
Col28a1Q2UY11 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col28a1Q2UY11 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col28a1Q2UY11 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col28a1Q2UY11 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
Col28a1Q2UY11 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col28a1Q2UY11 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col28a1Q2UY11 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col28a1Q2UY11 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col28a1Q2UY11 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.87■□□□□ 0.93
Col28a1Q2UY11 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col28a1Q2UY11 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col28a1Q2UY11 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col28a1Q2UY11 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col28a1Q2UY11 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.85■□□□□ 0.93
Col28a1Q2UY11 Scarna2-201ENSMUST00000157560 414 ntBASIC20.85■□□□□ 0.93
Col28a1Q2UY11 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.85■□□□□ 0.93
Col28a1Q2UY11 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col28a1Q2UY11 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Col28a1Q2UY11 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col28a1Q2UY11 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 86.2 ms