Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.05■□□□□ 0.8
Scn2aA0A0J9YTW6 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn2aA0A0J9YTW6 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn2aA0A0J9YTW6 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Gm45444-201ENSMUST00000211394 898 ntBASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.03■□□□□ 0.8
Scn2aA0A0J9YTW6 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn2aA0A0J9YTW6 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Scn2aA0A0J9YTW6 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Scn2aA0A0J9YTW6 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.02■□□□□ 0.79
Scn2aA0A0J9YTW6 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn2aA0A0J9YTW6 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Scn2aA0A0J9YTW6 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Scn2aA0A0J9YTW6 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm13238-201ENSMUST00000117655 780 ntBASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn2aA0A0J9YTW6 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn2aA0A0J9YTW6 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Scn2aA0A0J9YTW6 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn2aA0A0J9YTW6 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Scn2aA0A0J9YTW6 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn2aA0A0J9YTW6 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn2aA0A0J9YTW6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Scn2aA0A0J9YTW6 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Scn2aA0A0J9YTW6 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn2aA0A0J9YTW6 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn2aA0A0J9YTW6 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn2aA0A0J9YTW6 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms