Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC31.65■■■□□ 2.66
Scn4aQ9ER60 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Scn4aQ9ER60 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Scn4aQ9ER60 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Scn4aQ9ER60 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
Scn4aQ9ER60 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
Scn4aQ9ER60 Spcs1-207ENSMUST00000228767 1008 ntBASIC31.63■■■□□ 2.65
Scn4aQ9ER60 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC31.62■■■□□ 2.65
Scn4aQ9ER60 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC31.62■■■□□ 2.65
Scn4aQ9ER60 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Scn4aQ9ER60 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Scn4aQ9ER60 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Scn4aQ9ER60 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Scn4aQ9ER60 Gm4419-202ENSMUST00000226239 1431 ntBASIC31.61■■■□□ 2.65
Scn4aQ9ER60 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Scn4aQ9ER60 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Scn4aQ9ER60 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Scn4aQ9ER60 Golgb1-201ENSMUST00000023534 498 ntBASIC31.6■■■□□ 2.65
Scn4aQ9ER60 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Scn4aQ9ER60 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Scn4aQ9ER60 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
Scn4aQ9ER60 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Scn4aQ9ER60 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Scn4aQ9ER60 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Scn4aQ9ER60 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
Scn4aQ9ER60 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Scn4aQ9ER60 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Scn4aQ9ER60 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Scn4aQ9ER60 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC31.56■■■□□ 2.64
Scn4aQ9ER60 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Scn4aQ9ER60 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC31.55■■■□□ 2.64
Scn4aQ9ER60 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC31.54■■■□□ 2.64
Scn4aQ9ER60 Gm27011-201ENSMUST00000182352 972 ntBASIC31.54■■■□□ 2.64
Scn4aQ9ER60 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Scn4aQ9ER60 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Scn4aQ9ER60 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Scn4aQ9ER60 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Scn4aQ9ER60 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Scn4aQ9ER60 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Scn4aQ9ER60 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC31.52■■■□□ 2.64
Scn4aQ9ER60 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
Scn4aQ9ER60 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC31.51■■■□□ 2.63
Scn4aQ9ER60 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
Scn4aQ9ER60 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Scn4aQ9ER60 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
Scn4aQ9ER60 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Scn4aQ9ER60 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Scn4aQ9ER60 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC31.49■■■□□ 2.63
Scn4aQ9ER60 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC31.49■■■□□ 2.63
Scn4aQ9ER60 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC31.49■■■□□ 2.63
Scn4aQ9ER60 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Scn4aQ9ER60 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
Scn4aQ9ER60 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC31.49■■■□□ 2.63
Scn4aQ9ER60 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.48■■■□□ 2.63
Scn4aQ9ER60 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Scn4aQ9ER60 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC31.47■■■□□ 2.63
Scn4aQ9ER60 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Scn4aQ9ER60 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Scn4aQ9ER60 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Scn4aQ9ER60 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Scn4aQ9ER60 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Scn4aQ9ER60 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
Scn4aQ9ER60 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Scn4aQ9ER60 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Scn4aQ9ER60 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Scn4aQ9ER60 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC31.44■■■□□ 2.62
Scn4aQ9ER60 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Scn4aQ9ER60 AC112142.1-201ENSMUST00000228796 918 ntBASIC31.43■■■□□ 2.62
Scn4aQ9ER60 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Scn4aQ9ER60 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Scn4aQ9ER60 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC31.41■■■□□ 2.62
Scn4aQ9ER60 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC31.41■■■□□ 2.62
Scn4aQ9ER60 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC31.41■■■□□ 2.62
Scn4aQ9ER60 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Scn4aQ9ER60 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Scn4aQ9ER60 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Scn4aQ9ER60 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Scn4aQ9ER60 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Scn4aQ9ER60 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Scn4aQ9ER60 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Scn4aQ9ER60 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Scn4aQ9ER60 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Scn4aQ9ER60 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Scn4aQ9ER60 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Scn4aQ9ER60 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Scn4aQ9ER60 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Scn4aQ9ER60 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC31.36■■■□□ 2.61
Scn4aQ9ER60 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC31.36■■■□□ 2.61
Retrieved 100 of 76,532 protein–RNA pairs in 217 ms