Protein–RNA interactions for Protein: Q91XX8

Pcdhgb1, Protocadherin gamma B1, mousemouse

Predictions only

Length 918 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb1Q91XX8 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdhgb1Q91XX8 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdhgb1Q91XX8 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdhgb1Q91XX8 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC22.79■■□□□ 1.24
Pcdhgb1Q91XX8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Pcdhgb1Q91XX8 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdhgb1Q91XX8 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Pcdhgb1Q91XX8 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdhgb1Q91XX8 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 Il17rd-202ENSMUST00000223942 2186 ntBASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdhgb1Q91XX8 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC22.77■■□□□ 1.23
Pcdhgb1Q91XX8 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb1Q91XX8 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 Gm42699-201ENSMUST00000198104 1657 ntBASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
Pcdhgb1Q91XX8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Gm45444-201ENSMUST00000211394 898 ntBASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Pcdhgb1Q91XX8 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb1Q91XX8 Gm15546-201ENSMUST00000122095 826 ntBASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Gm43566-201ENSMUST00000196851 808 ntBASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Pcdhgb1Q91XX8 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Pcdhgb1Q91XX8 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
Pcdhgb1Q91XX8 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Pcdhgb1Q91XX8 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Pcdhgb1Q91XX8 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Pcdhgb1Q91XX8 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Pcdhgb1Q91XX8 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Gm5522-201ENSMUST00000189483 1242 ntBASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Pcdhgb1Q91XX8 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb1Q91XX8 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC22.69■■□□□ 1.22
Pcdhgb1Q91XX8 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb1Q91XX8 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb1Q91XX8 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb1Q91XX8 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Pcdhgb1Q91XX8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Pcdhgb1Q91XX8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Pcdhgb1Q91XX8 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Pcdhgb1Q91XX8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Pcdhgb1Q91XX8 AC153524.1-201ENSMUST00000220436 1935 ntBASIC22.67■■□□□ 1.22
Pcdhgb1Q91XX8 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Pcdhgb1Q91XX8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdhgb1Q91XX8 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC22.66■■□□□ 1.22
Pcdhgb1Q91XX8 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdhgb1Q91XX8 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdhgb1Q91XX8 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdhgb1Q91XX8 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Pcdhgb1Q91XX8 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Pcdhgb1Q91XX8 Gm15820-201ENSMUST00000201566 728 ntBASIC22.64■■□□□ 1.21
Pcdhgb1Q91XX8 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb1Q91XX8 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb1Q91XX8 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb1Q91XX8 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdhgb1Q91XX8 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC22.63■■□□□ 1.21
Pcdhgb1Q91XX8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdhgb1Q91XX8 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdhgb1Q91XX8 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdhgb1Q91XX8 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdhgb1Q91XX8 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms