Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
Rpa1Q8VEE4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC22■■□□□ 1.11
Rpa1Q8VEE4 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
Rpa1Q8VEE4 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Rpa1Q8VEE4 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rpa1Q8VEE4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rpa1Q8VEE4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Rpa1Q8VEE4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rpa1Q8VEE4 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Rpa1Q8VEE4 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.96■■□□□ 1.11
Rpa1Q8VEE4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rpa1Q8VEE4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rpa1Q8VEE4 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rpa1Q8VEE4 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rpa1Q8VEE4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Rpa1Q8VEE4 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Rpa1Q8VEE4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.94■■□□□ 1.1
Rpa1Q8VEE4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
Rpa1Q8VEE4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Rpa1Q8VEE4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Rpa1Q8VEE4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rpa1Q8VEE4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Rpa1Q8VEE4 Nkain2-201ENSMUST00000092602 558 ntBASIC21.92■■□□□ 1.1
Rpa1Q8VEE4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Rpa1Q8VEE4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Rpa1Q8VEE4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Rpa1Q8VEE4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.9■■□□□ 1.1
Rpa1Q8VEE4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Rpa1Q8VEE4 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Rpa1Q8VEE4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Rpa1Q8VEE4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Rpa1Q8VEE4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Rpa1Q8VEE4 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.88■■□□□ 1.09
Rpa1Q8VEE4 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Rpa1Q8VEE4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rpa1Q8VEE4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rpa1Q8VEE4 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Rpa1Q8VEE4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rpa1Q8VEE4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rpa1Q8VEE4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rpa1Q8VEE4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rpa1Q8VEE4 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rpa1Q8VEE4 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
Rpa1Q8VEE4 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Rpa1Q8VEE4 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
Rpa1Q8VEE4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Rpa1Q8VEE4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Rpa1Q8VEE4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.83■■□□□ 1.09
Rpa1Q8VEE4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Rpa1Q8VEE4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms