Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC26.14■■□□□ 1.78
Trim56Q80VI1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim56Q80VI1 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Trim56Q80VI1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC26.14■■□□□ 1.77
Trim56Q80VI1 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 Gm28731-201ENSMUST00000185564 1569 ntBASIC26.13■■□□□ 1.77
Trim56Q80VI1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 AC117245.4-201ENSMUST00000217388 1646 ntBASIC26.13■■□□□ 1.77
Trim56Q80VI1 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim56Q80VI1 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim56Q80VI1 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Trim56Q80VI1 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
Trim56Q80VI1 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC26.11■■□□□ 1.77
Trim56Q80VI1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Trim56Q80VI1 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Trim56Q80VI1 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC26.09■■□□□ 1.77
Trim56Q80VI1 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim56Q80VI1 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim56Q80VI1 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trim56Q80VI1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trim56Q80VI1 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Trim56Q80VI1 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC26.06■■□□□ 1.76
Trim56Q80VI1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Trim56Q80VI1 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trim56Q80VI1 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC26.05■■□□□ 1.76
Trim56Q80VI1 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
Trim56Q80VI1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Trim56Q80VI1 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Trim56Q80VI1 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim56Q80VI1 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim56Q80VI1 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim56Q80VI1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim56Q80VI1 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC26.03■■□□□ 1.76
Trim56Q80VI1 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC26.03■■□□□ 1.76
Trim56Q80VI1 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
Trim56Q80VI1 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim56Q80VI1 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC26.02■■□□□ 1.76
Trim56Q80VI1 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim56Q80VI1 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Trim56Q80VI1 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.02■■□□□ 1.76
Trim56Q80VI1 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.01■■□□□ 1.75
Trim56Q80VI1 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim56Q80VI1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Trim56Q80VI1 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC26■■□□□ 1.75
Trim56Q80VI1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim56Q80VI1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim56Q80VI1 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC26■■□□□ 1.75
Trim56Q80VI1 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim56Q80VI1 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim56Q80VI1 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim56Q80VI1 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
Trim56Q80VI1 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim56Q80VI1 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC25.99■■□□□ 1.75
Trim56Q80VI1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Trim56Q80VI1 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim56Q80VI1 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim56Q80VI1 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim56Q80VI1 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim56Q80VI1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Trim56Q80VI1 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim56Q80VI1 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC25.96■■□□□ 1.75
Trim56Q80VI1 Gm5921-201ENSMUST00000075898 882 ntBASIC25.96■■□□□ 1.75
Trim56Q80VI1 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trim56Q80VI1 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Trim56Q80VI1 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Trim56Q80VI1 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim56Q80VI1 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Trim56Q80VI1 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Trim56Q80VI1 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 270.4 ms