Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col5a1O88207 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col5a1O88207 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col5a1O88207 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col5a1O88207 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.29■□□□□ 0.84
Col5a1O88207 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.29■□□□□ 0.84
Col5a1O88207 Gm13241-201ENSMUST00000094493 780 ntBASIC20.29■□□□□ 0.84
Col5a1O88207 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col5a1O88207 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col5a1O88207 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col5a1O88207 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.27■□□□□ 0.84
Col5a1O88207 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.27■□□□□ 0.84
Col5a1O88207 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.27■□□□□ 0.84
Col5a1O88207 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col5a1O88207 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.27■□□□□ 0.84
Col5a1O88207 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col5a1O88207 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.27■□□□□ 0.84
Col5a1O88207 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.27■□□□□ 0.84
Col5a1O88207 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.27■□□□□ 0.84
Col5a1O88207 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.27■□□□□ 0.83
Col5a1O88207 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col5a1O88207 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col5a1O88207 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.26■□□□□ 0.83
Col5a1O88207 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col5a1O88207 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.26■□□□□ 0.83
Col5a1O88207 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.25■□□□□ 0.83
Col5a1O88207 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.25■□□□□ 0.83
Col5a1O88207 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Col5a1O88207 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.25■□□□□ 0.83
Col5a1O88207 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col5a1O88207 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col5a1O88207 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Col5a1O88207 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.24■□□□□ 0.83
Col5a1O88207 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col5a1O88207 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col5a1O88207 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.24■□□□□ 0.83
Col5a1O88207 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col5a1O88207 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.23■□□□□ 0.83
Col5a1O88207 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col5a1O88207 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col5a1O88207 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col5a1O88207 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col5a1O88207 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.23■□□□□ 0.83
Col5a1O88207 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col5a1O88207 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col5a1O88207 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col5a1O88207 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col5a1O88207 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Col5a1O88207 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col5a1O88207 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col5a1O88207 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col5a1O88207 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.2■□□□□ 0.82
Col5a1O88207 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col5a1O88207 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col5a1O88207 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col5a1O88207 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col5a1O88207 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col5a1O88207 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col5a1O88207 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col5a1O88207 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col5a1O88207 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col5a1O88207 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col5a1O88207 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.18■□□□□ 0.82
Col5a1O88207 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col5a1O88207 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col5a1O88207 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.17■□□□□ 0.82
Col5a1O88207 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col5a1O88207 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col5a1O88207 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col5a1O88207 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Col5a1O88207 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col5a1O88207 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.16■□□□□ 0.82
Col5a1O88207 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col5a1O88207 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col5a1O88207 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col5a1O88207 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col5a1O88207 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col5a1O88207 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col5a1O88207 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col5a1O88207 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.14■□□□□ 0.81
Col5a1O88207 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms