Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC24.19■■□□□ 1.46
Prpf40aQ9R1C7 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Prpf40aQ9R1C7 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40aQ9R1C7 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40aQ9R1C7 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Prpf40aQ9R1C7 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40aQ9R1C7 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40aQ9R1C7 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40aQ9R1C7 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
Prpf40aQ9R1C7 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40aQ9R1C7 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40aQ9R1C7 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40aQ9R1C7 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Prpf40aQ9R1C7 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Prpf40aQ9R1C7 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Prpf40aQ9R1C7 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC24.14■■□□□ 1.45
Prpf40aQ9R1C7 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Gm44428-201ENSMUST00000204474 874 ntBASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40aQ9R1C7 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
Prpf40aQ9R1C7 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40aQ9R1C7 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40aQ9R1C7 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40aQ9R1C7 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40aQ9R1C7 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Prpf40aQ9R1C7 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 Gm17641-201ENSMUST00000166328 2350 ntBASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 AC164433.2-201ENSMUST00000226346 1701 ntBASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Prpf40aQ9R1C7 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
Prpf40aQ9R1C7 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Prpf40aQ9R1C7 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Prpf40aQ9R1C7 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Prpf40aQ9R1C7 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
Prpf40aQ9R1C7 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
Prpf40aQ9R1C7 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Prpf40aQ9R1C7 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Prpf40aQ9R1C7 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Prpf40aQ9R1C7 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC24.06■■□□□ 1.44
Prpf40aQ9R1C7 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC24.06■■□□□ 1.44
Prpf40aQ9R1C7 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Prpf40aQ9R1C7 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC24.05■■□□□ 1.44
Prpf40aQ9R1C7 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
Prpf40aQ9R1C7 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC24.05■■□□□ 1.44
Prpf40aQ9R1C7 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Prpf40aQ9R1C7 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Prpf40aQ9R1C7 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
Prpf40aQ9R1C7 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Prpf40aQ9R1C7 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Prpf40aQ9R1C7 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC24.04■■□□□ 1.44
Prpf40aQ9R1C7 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Prpf40aQ9R1C7 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC24.02■■□□□ 1.44
Prpf40aQ9R1C7 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Prpf40aQ9R1C7 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Prpf40aQ9R1C7 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
Prpf40aQ9R1C7 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Prpf40aQ9R1C7 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Prpf40aQ9R1C7 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Prpf40aQ9R1C7 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Gm7199-201ENSMUST00000118327 1485 ntBASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Prpf40aQ9R1C7 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Prpf40aQ9R1C7 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.99■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms