Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC26.38■■□□□ 1.81
Upf1Q9EPU0 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Upf1Q9EPU0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Upf1Q9EPU0 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Upf1Q9EPU0 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Upf1Q9EPU0 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Upf1Q9EPU0 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Upf1Q9EPU0 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Upf1Q9EPU0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Upf1Q9EPU0 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC26.34■■□□□ 1.81
Upf1Q9EPU0 Gm28731-201ENSMUST00000185564 1569 ntBASIC26.33■■□□□ 1.81
Upf1Q9EPU0 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC26.33■■□□□ 1.81
Upf1Q9EPU0 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Upf1Q9EPU0 AC112142.1-201ENSMUST00000228796 918 ntBASIC26.33■■□□□ 1.81
Upf1Q9EPU0 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC26.32■■□□□ 1.8
Upf1Q9EPU0 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Upf1Q9EPU0 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Upf1Q9EPU0 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.32■■□□□ 1.8
Upf1Q9EPU0 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC26.31■■□□□ 1.8
Upf1Q9EPU0 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Upf1Q9EPU0 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
Upf1Q9EPU0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Upf1Q9EPU0 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
Upf1Q9EPU0 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC26.3■■□□□ 1.8
Upf1Q9EPU0 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Upf1Q9EPU0 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC26.3■■□□□ 1.8
Upf1Q9EPU0 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC26.29■■□□□ 1.8
Upf1Q9EPU0 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Upf1Q9EPU0 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Gm40881-201ENSMUST00000223397 166 ntBASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Upf1Q9EPU0 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Upf1Q9EPU0 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC26.26■■□□□ 1.79
Upf1Q9EPU0 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Upf1Q9EPU0 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Upf1Q9EPU0 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Upf1Q9EPU0 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Upf1Q9EPU0 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Upf1Q9EPU0 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Upf1Q9EPU0 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf1Q9EPU0 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf1Q9EPU0 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf1Q9EPU0 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf1Q9EPU0 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC26.23■■□□□ 1.79
Upf1Q9EPU0 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Upf1Q9EPU0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Upf1Q9EPU0 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC26.22■■□□□ 1.79
Upf1Q9EPU0 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Upf1Q9EPU0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Upf1Q9EPU0 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Upf1Q9EPU0 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Upf1Q9EPU0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.19■■□□□ 1.78
Upf1Q9EPU0 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.18■■□□□ 1.78
Upf1Q9EPU0 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
Upf1Q9EPU0 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Upf1Q9EPU0 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Upf1Q9EPU0 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC26.17■■□□□ 1.78
Upf1Q9EPU0 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Upf1Q9EPU0 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Upf1Q9EPU0 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Upf1Q9EPU0 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Upf1Q9EPU0 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Upf1Q9EPU0 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Upf1Q9EPU0 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Upf1Q9EPU0 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Upf1Q9EPU0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf1Q9EPU0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Upf1Q9EPU0 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Upf1Q9EPU0 Gm2011-201ENSMUST00000203124 1263 ntBASIC26.14■■□□□ 1.78
Upf1Q9EPU0 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC26.14■■□□□ 1.78
Upf1Q9EPU0 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Upf1Q9EPU0 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC26.13■■□□□ 1.77
Upf1Q9EPU0 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC26.13■■□□□ 1.77
Upf1Q9EPU0 Golgb1-201ENSMUST00000023534 498 ntBASIC26.13■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 308.3 ms