Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm21956-201ENSMUST00000179946 522 ntBASIC25.76■■□□□ 1.71
Col11a1Q61245 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Col11a1Q61245 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
Col11a1Q61245 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Col11a1Q61245 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Col11a1Q61245 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Col11a1Q61245 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Col11a1Q61245 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Col11a1Q61245 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC25.74■■□□□ 1.71
Col11a1Q61245 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Col11a1Q61245 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Col11a1Q61245 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col11a1Q61245 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
Col11a1Q61245 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col11a1Q61245 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col11a1Q61245 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Col11a1Q61245 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Col11a1Q61245 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.71■■□□□ 1.71
Col11a1Q61245 Serp2-204ENSMUST00000228055 705 ntBASIC25.71■■□□□ 1.71
Col11a1Q61245 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC25.71■■□□□ 1.71
Col11a1Q61245 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Col11a1Q61245 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Col11a1Q61245 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col11a1Q61245 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col11a1Q61245 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
Col11a1Q61245 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC25.67■■□□□ 1.7
Col11a1Q61245 Gm13241-201ENSMUST00000094493 780 ntBASIC25.67■■□□□ 1.7
Col11a1Q61245 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col11a1Q61245 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col11a1Q61245 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Col11a1Q61245 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC25.65■■□□□ 1.7
Col11a1Q61245 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col11a1Q61245 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col11a1Q61245 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Col11a1Q61245 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Col11a1Q61245 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Col11a1Q61245 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC25.63■■□□□ 1.69
Col11a1Q61245 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Col11a1Q61245 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Col11a1Q61245 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Col11a1Q61245 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.62■■□□□ 1.69
Col11a1Q61245 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Col11a1Q61245 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Col11a1Q61245 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC25.61■■□□□ 1.69
Col11a1Q61245 Amer2-203ENSMUST00000225247 2662 ntBASIC25.61■■□□□ 1.69
Col11a1Q61245 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
Col11a1Q61245 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC25.6■■□□□ 1.69
Col11a1Q61245 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Col11a1Q61245 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Col11a1Q61245 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Col11a1Q61245 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Col11a1Q61245 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Col11a1Q61245 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC25.59■■□□□ 1.69
Col11a1Q61245 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC25.59■■□□□ 1.69
Col11a1Q61245 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25.59■■□□□ 1.69
Col11a1Q61245 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC25.58■■□□□ 1.69
Col11a1Q61245 Gm43034-201ENSMUST00000198678 1364 ntBASIC25.58■■□□□ 1.69
Col11a1Q61245 Gm7199-201ENSMUST00000118327 1485 ntBASIC25.58■■□□□ 1.69
Col11a1Q61245 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
Col11a1Q61245 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
Col11a1Q61245 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC25.58■■□□□ 1.68
Col11a1Q61245 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC25.58■■□□□ 1.68
Col11a1Q61245 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC25.58■■□□□ 1.68
Col11a1Q61245 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC25.58■■□□□ 1.68
Col11a1Q61245 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Col11a1Q61245 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.68
Col11a1Q61245 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
Col11a1Q61245 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Col11a1Q61245 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
Col11a1Q61245 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Col11a1Q61245 Gm16464-201ENSMUST00000117815 1095 ntBASIC25.56■■□□□ 1.68
Col11a1Q61245 Gm22238-201ENSMUST00000175222 88 ntBASIC25.56■■□□□ 1.68
Col11a1Q61245 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Col11a1Q61245 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col11a1Q61245 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC25.54■■□□□ 1.68
Col11a1Q61245 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col11a1Q61245 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Col11a1Q61245 Gm7417-201ENSMUST00000192950 473 ntBASIC25.53■■□□□ 1.68
Col11a1Q61245 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
Col11a1Q61245 Gm9847-201ENSMUST00000052528 599 ntBASIC25.53■■□□□ 1.68
Col11a1Q61245 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Col11a1Q61245 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Col11a1Q61245 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Col11a1Q61245 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Col11a1Q61245 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Col11a1Q61245 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25.52■■□□□ 1.68
Col11a1Q61245 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Col11a1Q61245 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Col11a1Q61245 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Col11a1Q61245 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC25.52■■□□□ 1.68
Col11a1Q61245 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
Col11a1Q61245 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC25.51■■□□□ 1.68
Col11a1Q61245 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
Col11a1Q61245 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC25.51■■□□□ 1.67
Col11a1Q61245 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC25.51■■□□□ 1.67
Col11a1Q61245 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
Col11a1Q61245 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Col11a1Q61245 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC25.51■■□□□ 1.67
Col11a1Q61245 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Col11a1Q61245 AC164433.2-201ENSMUST00000226346 1701 ntBASIC25.5■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 93.7 ms