Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usf1Q61069 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usf1Q61069 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usf1Q61069 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Usf1Q61069 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usf1Q61069 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usf1Q61069 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usf1Q61069 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.39■□□□□ 0.85
Usf1Q61069 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Usf1Q61069 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.39■□□□□ 0.85
Usf1Q61069 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usf1Q61069 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.38■□□□□ 0.85
Usf1Q61069 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Usf1Q61069 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.38■□□□□ 0.85
Usf1Q61069 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Usf1Q61069 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usf1Q61069 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usf1Q61069 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.37■□□□□ 0.85
Usf1Q61069 Gm7417-201ENSMUST00000192950 473 ntBASIC20.37■□□□□ 0.85
Usf1Q61069 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.37■□□□□ 0.85
Usf1Q61069 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Usf1Q61069 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usf1Q61069 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.36■□□□□ 0.85
Usf1Q61069 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Usf1Q61069 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Usf1Q61069 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usf1Q61069 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.36■□□□□ 0.85
Usf1Q61069 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usf1Q61069 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Usf1Q61069 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usf1Q61069 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usf1Q61069 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Usf1Q61069 Gm13241-201ENSMUST00000094493 780 ntBASIC20.34■□□□□ 0.85
Usf1Q61069 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usf1Q61069 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.33■□□□□ 0.85
Usf1Q61069 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usf1Q61069 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usf1Q61069 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Usf1Q61069 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usf1Q61069 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
Usf1Q61069 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usf1Q61069 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usf1Q61069 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Usf1Q61069 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usf1Q61069 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usf1Q61069 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usf1Q61069 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.31■□□□□ 0.84
Usf1Q61069 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usf1Q61069 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.3■□□□□ 0.84
Usf1Q61069 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.3■□□□□ 0.84
Usf1Q61069 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usf1Q61069 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usf1Q61069 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.3■□□□□ 0.84
Usf1Q61069 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usf1Q61069 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.3■□□□□ 0.84
Usf1Q61069 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usf1Q61069 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usf1Q61069 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Usf1Q61069 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.29■□□□□ 0.84
Usf1Q61069 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usf1Q61069 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usf1Q61069 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.29■□□□□ 0.84
Usf1Q61069 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usf1Q61069 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usf1Q61069 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usf1Q61069 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Usf1Q61069 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usf1Q61069 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usf1Q61069 Amer2-203ENSMUST00000225247 2662 ntBASIC20.27■□□□□ 0.83
Usf1Q61069 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usf1Q61069 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.26■□□□□ 0.83
Usf1Q61069 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.26■□□□□ 0.83
Usf1Q61069 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.26■□□□□ 0.83
Usf1Q61069 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usf1Q61069 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usf1Q61069 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.25■□□□□ 0.83
Usf1Q61069 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.25■□□□□ 0.83
Usf1Q61069 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usf1Q61069 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Usf1Q61069 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usf1Q61069 Gm9847-201ENSMUST00000052528 599 ntBASIC20.24■□□□□ 0.83
Usf1Q61069 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Usf1Q61069 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.22■□□□□ 0.83
Usf1Q61069 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.22■□□□□ 0.83
Usf1Q61069 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usf1Q61069 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usf1Q61069 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usf1Q61069 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usf1Q61069 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Usf1Q61069 Serp2-204ENSMUST00000228055 705 ntBASIC20.21■□□□□ 0.83
Usf1Q61069 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usf1Q61069 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usf1Q61069 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usf1Q61069 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
Usf1Q61069 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 8.7 ms