Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Ddb1Q3U1J4 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC28.92■■■□□ 2.22
Ddb1Q3U1J4 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
Ddb1Q3U1J4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ddb1Q3U1J4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
Ddb1Q3U1J4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ddb1Q3U1J4 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Ddb1Q3U1J4 Gm16464-201ENSMUST00000117815 1095 ntBASIC28.89■■■□□ 2.22
Ddb1Q3U1J4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Ddb1Q3U1J4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Ddb1Q3U1J4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Ddb1Q3U1J4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Ddb1Q3U1J4 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC28.88■■■□□ 2.21
Ddb1Q3U1J4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Ddb1Q3U1J4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
Ddb1Q3U1J4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC28.87■■■□□ 2.21
Ddb1Q3U1J4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC28.87■■■□□ 2.21
Ddb1Q3U1J4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC28.86■■■□□ 2.21
Ddb1Q3U1J4 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC28.86■■■□□ 2.21
Ddb1Q3U1J4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Ddb1Q3U1J4 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC28.86■■■□□ 2.21
Ddb1Q3U1J4 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ddb1Q3U1J4 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ddb1Q3U1J4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC28.85■■■□□ 2.21
Ddb1Q3U1J4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ddb1Q3U1J4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ddb1Q3U1J4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Ddb1Q3U1J4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.83■■■□□ 2.21
Ddb1Q3U1J4 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Ddb1Q3U1J4 Gm9847-201ENSMUST00000052528 599 ntBASIC28.83■■■□□ 2.21
Ddb1Q3U1J4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
Ddb1Q3U1J4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ddb1Q3U1J4 Gm21956-201ENSMUST00000179946 522 ntBASIC28.81■■■□□ 2.2
Ddb1Q3U1J4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC28.81■■■□□ 2.2
Ddb1Q3U1J4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ddb1Q3U1J4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ddb1Q3U1J4 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ddb1Q3U1J4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ddb1Q3U1J4 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.79■■■□□ 2.2
Ddb1Q3U1J4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
Ddb1Q3U1J4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC28.79■■■□□ 2.2
Ddb1Q3U1J4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Ddb1Q3U1J4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ddb1Q3U1J4 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC28.77■■■□□ 2.2
Ddb1Q3U1J4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Ddb1Q3U1J4 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Ddb1Q3U1J4 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC28.76■■■□□ 2.19
Ddb1Q3U1J4 Gm7199-201ENSMUST00000118327 1485 ntBASIC28.76■■■□□ 2.19
Ddb1Q3U1J4 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Ddb1Q3U1J4 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
Ddb1Q3U1J4 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC28.75■■■□□ 2.19
Ddb1Q3U1J4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC28.74■■■□□ 2.19
Ddb1Q3U1J4 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ddb1Q3U1J4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ddb1Q3U1J4 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ddb1Q3U1J4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Ddb1Q3U1J4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC28.73■■■□□ 2.19
Ddb1Q3U1J4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ddb1Q3U1J4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ddb1Q3U1J4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
Ddb1Q3U1J4 Gm22238-201ENSMUST00000175222 88 ntBASIC28.72■■■□□ 2.19
Ddb1Q3U1J4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ddb1Q3U1J4 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC28.71■■■□□ 2.19
Ddb1Q3U1J4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Ddb1Q3U1J4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC28.7■■■□□ 2.18
Ddb1Q3U1J4 Amer2-203ENSMUST00000225247 2662 ntBASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Ddb1Q3U1J4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Ddb1Q3U1J4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Ddb1Q3U1J4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC28.68■■■□□ 2.18
Ddb1Q3U1J4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Ddb1Q3U1J4 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC28.67■■■□□ 2.18
Ddb1Q3U1J4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC28.67■■■□□ 2.18
Ddb1Q3U1J4 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC28.67■■■□□ 2.18
Ddb1Q3U1J4 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Ddb1Q3U1J4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Ddb1Q3U1J4 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 132 ms