Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Cdh11P55288 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh11P55288 Gm37136-201ENSMUST00000194368 194 ntBASIC19.99■□□□□ 0.79
Cdh11P55288 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.99■□□□□ 0.79
Cdh11P55288 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh11P55288 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cdh11P55288 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cdh11P55288 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh11P55288 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh11P55288 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh11P55288 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh11P55288 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh11P55288 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Cdh11P55288 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh11P55288 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Cdh11P55288 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh11P55288 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh11P55288 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC19.97■□□□□ 0.79
Cdh11P55288 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh11P55288 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Cdh11P55288 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.96■□□□□ 0.79
Cdh11P55288 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Mir3960-201ENSMUST00000198213 73 ntBASIC19.96■□□□□ 0.79
Cdh11P55288 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh11P55288 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh11P55288 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh11P55288 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Cdh11P55288 Pkd1-207ENSMUST00000228550 1050 ntBASIC19.95■□□□□ 0.78
Cdh11P55288 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh11P55288 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh11P55288 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh11P55288 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Scarna2-201ENSMUST00000157560 414 ntBASIC19.94■□□□□ 0.78
Cdh11P55288 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Cdh11P55288 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Cdh11P55288 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh11P55288 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh11P55288 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh11P55288 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Cdh11P55288 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh11P55288 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh11P55288 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh11P55288 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Cdh11P55288 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.92■□□□□ 0.78
Cdh11P55288 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 Gm4419-202ENSMUST00000226239 1431 ntBASIC19.92■□□□□ 0.78
Cdh11P55288 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh11P55288 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cdh11P55288 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdh11P55288 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdh11P55288 Gm11687-201ENSMUST00000118911 886 ntBASIC19.91■□□□□ 0.78
Cdh11P55288 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.91■□□□□ 0.78
Cdh11P55288 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.91■□□□□ 0.78
Cdh11P55288 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdh11P55288 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cdh11P55288 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdh11P55288 Gm9806-201ENSMUST00000051080 552 ntBASIC19.9■□□□□ 0.78
Cdh11P55288 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cdh11P55288 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cdh11P55288 Gm45364-201ENSMUST00000210883 159 ntBASIC19.88■□□□□ 0.77
Cdh11P55288 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdh11P55288 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdh11P55288 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdh11P55288 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Cdh11P55288 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdh11P55288 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cdh11P55288 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.87■□□□□ 0.77
Cdh11P55288 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdh11P55288 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdh11P55288 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdh11P55288 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.86■□□□□ 0.77
Cdh11P55288 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Gm13889-201ENSMUST00000099689 1386 ntBASIC19.86■□□□□ 0.77
Cdh11P55288 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Cdh11P55288 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.86■□□□□ 0.77
Cdh11P55288 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC19.86■□□□□ 0.77
Cdh11P55288 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdh11P55288 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.86■□□□□ 0.77
Cdh11P55288 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC19.85■□□□□ 0.77
Cdh11P55288 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cdh11P55288 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms