Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.36■■□□□ 1.01
Cdx2P43241 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdx2P43241 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.36■■□□□ 1.01
Cdx2P43241 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdx2P43241 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.35■■□□□ 1.01
Cdx2P43241 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdx2P43241 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.35■■□□□ 1.01
Cdx2P43241 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.35■■□□□ 1.01
Cdx2P43241 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdx2P43241 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.35■■□□□ 1.01
Cdx2P43241 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.35■■□□□ 1.01
Cdx2P43241 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cdx2P43241 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cdx2P43241 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdx2P43241 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdx2P43241 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.33■■□□□ 1.01
Cdx2P43241 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.33■■□□□ 1.01
Cdx2P43241 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.33■■□□□ 1.01
Cdx2P43241 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cdx2P43241 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cdx2P43241 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdx2P43241 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdx2P43241 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdx2P43241 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdx2P43241 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.31■■□□□ 1
Cdx2P43241 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC21.3■■□□□ 1
Cdx2P43241 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.3■■□□□ 1
Cdx2P43241 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cdx2P43241 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cdx2P43241 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Cdx2P43241 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdx2P43241 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.29■■□□□ 1
Cdx2P43241 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Cdx2P43241 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Cdx2P43241 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdx2P43241 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdx2P43241 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cdx2P43241 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.28■■□□□ 1
Cdx2P43241 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC21.28■■□□□ 1
Cdx2P43241 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Cdx2P43241 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Cdx2P43241 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Cdx2P43241 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdx2P43241 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdx2P43241 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdx2P43241 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cdx2P43241 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Cdx2P43241 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Cdx2P43241 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Cdx2P43241 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cdx2P43241 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdx2P43241 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdx2P43241 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdx2P43241 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.24■□□□□ 0.99
Cdx2P43241 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.24■□□□□ 0.99
Cdx2P43241 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdx2P43241 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.23■□□□□ 0.99
Cdx2P43241 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdx2P43241 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.23■□□□□ 0.99
Cdx2P43241 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdx2P43241 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdx2P43241 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.23■□□□□ 0.99
Cdx2P43241 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cdx2P43241 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdx2P43241 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Cdx2P43241 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdx2P43241 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.22■□□□□ 0.99
Cdx2P43241 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.21■□□□□ 0.99
Cdx2P43241 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdx2P43241 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Cdx2P43241 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.2■□□□□ 0.98
Cdx2P43241 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.2■□□□□ 0.98
Cdx2P43241 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cdx2P43241 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdx2P43241 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdx2P43241 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Cdx2P43241 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.18■□□□□ 0.98
Cdx2P43241 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdx2P43241 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdx2P43241 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdx2P43241 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdx2P43241 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
Cdx2P43241 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdx2P43241 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdx2P43241 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cdx2P43241 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdx2P43241 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cdx2P43241 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC21.16■□□□□ 0.98
Cdx2P43241 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms