Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk3O35492 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.9■□□□□ 0.94
Clk3O35492 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk3O35492 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk3O35492 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Clk3O35492 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Clk3O35492 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clk3O35492 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clk3O35492 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clk3O35492 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Clk3O35492 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Clk3O35492 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Clk3O35492 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.88■□□□□ 0.93
Clk3O35492 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Clk3O35492 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Clk3O35492 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk3O35492 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk3O35492 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk3O35492 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk3O35492 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Clk3O35492 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk3O35492 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk3O35492 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.86■□□□□ 0.93
Clk3O35492 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clk3O35492 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk3O35492 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk3O35492 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk3O35492 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.85■□□□□ 0.93
Clk3O35492 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.85■□□□□ 0.93
Clk3O35492 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk3O35492 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk3O35492 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.85■□□□□ 0.93
Clk3O35492 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk3O35492 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk3O35492 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk3O35492 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Clk3O35492 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.83■□□□□ 0.93
Clk3O35492 Gm9812-201ENSMUST00000061934 968 ntBASIC20.83■□□□□ 0.93
Clk3O35492 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clk3O35492 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.82■□□□□ 0.92
Clk3O35492 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
Clk3O35492 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.81■□□□□ 0.92
Clk3O35492 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clk3O35492 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk3O35492 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.8■□□□□ 0.92
Clk3O35492 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Clk3O35492 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Clk3O35492 Gm45364-201ENSMUST00000210883 159 ntBASIC20.8■□□□□ 0.92
Clk3O35492 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk3O35492 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.79■□□□□ 0.92
Clk3O35492 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk3O35492 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clk3O35492 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.79■□□□□ 0.92
Clk3O35492 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk3O35492 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk3O35492 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clk3O35492 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.78■□□□□ 0.92
Clk3O35492 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.78■□□□□ 0.92
Clk3O35492 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Clk3O35492 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Clk3O35492 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.78■□□□□ 0.92
Clk3O35492 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk3O35492 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clk3O35492 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Clk3O35492 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk3O35492 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk3O35492 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk3O35492 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Clk3O35492 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Clk3O35492 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk3O35492 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk3O35492 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk3O35492 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk3O35492 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.76■□□□□ 0.91
Clk3O35492 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clk3O35492 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk3O35492 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Clk3O35492 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clk3O35492 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk3O35492 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clk3O35492 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clk3O35492 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk3O35492 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk3O35492 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.74■□□□□ 0.91
Clk3O35492 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Clk3O35492 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk3O35492 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Clk3O35492 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Clk3O35492 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk3O35492 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Clk3O35492 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk3O35492 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms