Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a4A2AX52 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a4A2AX52 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a4A2AX52 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a4A2AX52 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a4A2AX52 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a4A2AX52 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a4A2AX52 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a4A2AX52 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a4A2AX52 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col6a4A2AX52 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a4A2AX52 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col6a4A2AX52 Gm9847-201ENSMUST00000052528 599 ntBASIC18.75■□□□□ 0.59
Col6a4A2AX52 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.75■□□□□ 0.59
Col6a4A2AX52 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a4A2AX52 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.75■□□□□ 0.59
Col6a4A2AX52 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a4A2AX52 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a4A2AX52 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a4A2AX52 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a4A2AX52 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a4A2AX52 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Gm7417-201ENSMUST00000192950 473 ntBASIC18.73■□□□□ 0.59
Col6a4A2AX52 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a4A2AX52 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a4A2AX52 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a4A2AX52 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col6a4A2AX52 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a4A2AX52 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.72■□□□□ 0.59
Col6a4A2AX52 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a4A2AX52 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.71■□□□□ 0.59
Col6a4A2AX52 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a4A2AX52 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a4A2AX52 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a4A2AX52 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col6a4A2AX52 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a4A2AX52 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a4A2AX52 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a4A2AX52 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.69■□□□□ 0.58
Col6a4A2AX52 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.69■□□□□ 0.58
Col6a4A2AX52 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a4A2AX52 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 AC164433.2-201ENSMUST00000226346 1701 ntBASIC18.68■□□□□ 0.58
Col6a4A2AX52 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a4A2AX52 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.67■□□□□ 0.58
Col6a4A2AX52 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a4A2AX52 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Col6a4A2AX52 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a4A2AX52 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a4A2AX52 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a4A2AX52 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.66■□□□□ 0.58
Col6a4A2AX52 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.66■□□□□ 0.58
Col6a4A2AX52 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a4A2AX52 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a4A2AX52 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a4A2AX52 Gm12922-201ENSMUST00000120626 809 ntBASIC18.65■□□□□ 0.58
Col6a4A2AX52 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.65■□□□□ 0.58
Col6a4A2AX52 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a4A2AX52 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col6a4A2AX52 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a4A2AX52 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a4A2AX52 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
Col6a4A2AX52 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.63■□□□□ 0.57
Col6a4A2AX52 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.63■□□□□ 0.57
Col6a4A2AX52 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a4A2AX52 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a4A2AX52 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a4A2AX52 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.63■□□□□ 0.57
Col6a4A2AX52 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.62■□□□□ 0.57
Col6a4A2AX52 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms