Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn2aA0A0J9YTW6 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn2aA0A0J9YTW6 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn2aA0A0J9YTW6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Scn2aA0A0J9YTW6 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn2aA0A0J9YTW6 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn2aA0A0J9YTW6 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn2aA0A0J9YTW6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn2aA0A0J9YTW6 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn2aA0A0J9YTW6 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn2aA0A0J9YTW6 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn2aA0A0J9YTW6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Scn2aA0A0J9YTW6 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.36■□□□□ 0.85
Scn2aA0A0J9YTW6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scn2aA0A0J9YTW6 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn2aA0A0J9YTW6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn2aA0A0J9YTW6 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn2aA0A0J9YTW6 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.33■□□□□ 0.85
Scn2aA0A0J9YTW6 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn2aA0A0J9YTW6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn2aA0A0J9YTW6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn2aA0A0J9YTW6 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Scn2aA0A0J9YTW6 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.32■□□□□ 0.84
Scn2aA0A0J9YTW6 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.31■□□□□ 0.84
Scn2aA0A0J9YTW6 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn2aA0A0J9YTW6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn2aA0A0J9YTW6 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn2aA0A0J9YTW6 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn2aA0A0J9YTW6 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn2aA0A0J9YTW6 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Scn2aA0A0J9YTW6 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn2aA0A0J9YTW6 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn2aA0A0J9YTW6 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn2aA0A0J9YTW6 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn2aA0A0J9YTW6 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Scn2aA0A0J9YTW6 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.26■□□□□ 0.83
Scn2aA0A0J9YTW6 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.26■□□□□ 0.83
Scn2aA0A0J9YTW6 Gm5921-201ENSMUST00000075898 882 ntBASIC20.26■□□□□ 0.83
Scn2aA0A0J9YTW6 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn2aA0A0J9YTW6 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.25■□□□□ 0.83
Scn2aA0A0J9YTW6 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn2aA0A0J9YTW6 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn2aA0A0J9YTW6 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Scn2aA0A0J9YTW6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn2aA0A0J9YTW6 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn2aA0A0J9YTW6 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Scn2aA0A0J9YTW6 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn2aA0A0J9YTW6 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Scn2aA0A0J9YTW6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn2aA0A0J9YTW6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.23■□□□□ 0.83
Scn2aA0A0J9YTW6 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn2aA0A0J9YTW6 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn2aA0A0J9YTW6 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn2aA0A0J9YTW6 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn2aA0A0J9YTW6 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Scn2aA0A0J9YTW6 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn2aA0A0J9YTW6 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms