Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Gm9910-201ENSMUST00000195385 1550 ntBASIC22.29■■□□□ 1.16
H2afb2S4R1M3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb2S4R1M3 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb2S4R1M3 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb2S4R1M3 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb2S4R1M3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb2S4R1M3 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb2S4R1M3 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
H2afb2S4R1M3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
H2afb2S4R1M3 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC22.25■■□□□ 1.15
H2afb2S4R1M3 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
H2afb2S4R1M3 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
H2afb2S4R1M3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
H2afb2S4R1M3 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb2S4R1M3 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC22.22■■□□□ 1.15
H2afb2S4R1M3 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
H2afb2S4R1M3 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
H2afb2S4R1M3 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
H2afb2S4R1M3 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
H2afb2S4R1M3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
H2afb2S4R1M3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
H2afb2S4R1M3 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
H2afb2S4R1M3 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.21■■□□□ 1.15
H2afb2S4R1M3 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
H2afb2S4R1M3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
H2afb2S4R1M3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
H2afb2S4R1M3 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb2S4R1M3 Gm6934-201ENSMUST00000194780 1905 ntBASIC22.18■■□□□ 1.14
H2afb2S4R1M3 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
H2afb2S4R1M3 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC22.18■■□□□ 1.14
H2afb2S4R1M3 Scarna2-201ENSMUST00000157560 414 ntBASIC22.18■■□□□ 1.14
H2afb2S4R1M3 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Gm7199-201ENSMUST00000118327 1485 ntBASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC22.17■■□□□ 1.14
H2afb2S4R1M3 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
H2afb2S4R1M3 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Gm9806-201ENSMUST00000051080 552 ntBASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
H2afb2S4R1M3 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
H2afb2S4R1M3 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
H2afb2S4R1M3 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC22.14■■□□□ 1.13
H2afb2S4R1M3 Gm16437-201ENSMUST00000025669 507 ntBASIC22.14■■□□□ 1.13
H2afb2S4R1M3 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
H2afb2S4R1M3 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb2S4R1M3 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms