Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
Cdc40Q9DC48 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdc40Q9DC48 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdc40Q9DC48 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Cdc40Q9DC48 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.58■□□□□ 0.88
Cdc40Q9DC48 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdc40Q9DC48 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Cdc40Q9DC48 Gm14523-201ENSMUST00000117260 558 ntBASIC20.55■□□□□ 0.88
Cdc40Q9DC48 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Cdc40Q9DC48 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cdc40Q9DC48 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cdc40Q9DC48 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdc40Q9DC48 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdc40Q9DC48 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdc40Q9DC48 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.54■□□□□ 0.88
Cdc40Q9DC48 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Cdc40Q9DC48 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdc40Q9DC48 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cdc40Q9DC48 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.53■□□□□ 0.88
Cdc40Q9DC48 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdc40Q9DC48 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdc40Q9DC48 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Cdc40Q9DC48 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.52■□□□□ 0.88
Cdc40Q9DC48 Terc-201ENSMUST00000082862 423 ntBASIC20.52■□□□□ 0.88
Cdc40Q9DC48 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdc40Q9DC48 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdc40Q9DC48 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Cdc40Q9DC48 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cdc40Q9DC48 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdc40Q9DC48 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cdc40Q9DC48 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdc40Q9DC48 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdc40Q9DC48 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdc40Q9DC48 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.46■□□□□ 0.87
Cdc40Q9DC48 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdc40Q9DC48 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cdc40Q9DC48 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
Cdc40Q9DC48 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.45■□□□□ 0.86
Cdc40Q9DC48 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdc40Q9DC48 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.45■□□□□ 0.86
Cdc40Q9DC48 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdc40Q9DC48 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdc40Q9DC48 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdc40Q9DC48 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.44■□□□□ 0.86
Cdc40Q9DC48 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdc40Q9DC48 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms