Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.95■□□□□ 0.94
Use1Q9CQ56 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Use1Q9CQ56 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Use1Q9CQ56 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.94■□□□□ 0.94
Use1Q9CQ56 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.94■□□□□ 0.94
Use1Q9CQ56 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Use1Q9CQ56 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Use1Q9CQ56 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Use1Q9CQ56 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Use1Q9CQ56 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Use1Q9CQ56 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.9■□□□□ 0.94
Use1Q9CQ56 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Use1Q9CQ56 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.9■□□□□ 0.94
Use1Q9CQ56 Gm4799-201ENSMUST00000095396 657 ntBASIC20.9■□□□□ 0.94
Use1Q9CQ56 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Use1Q9CQ56 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Use1Q9CQ56 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Use1Q9CQ56 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Use1Q9CQ56 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Use1Q9CQ56 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Use1Q9CQ56 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Use1Q9CQ56 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Use1Q9CQ56 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
Use1Q9CQ56 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Use1Q9CQ56 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Use1Q9CQ56 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Use1Q9CQ56 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
Use1Q9CQ56 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Use1Q9CQ56 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Use1Q9CQ56 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Use1Q9CQ56 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Use1Q9CQ56 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Use1Q9CQ56 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Use1Q9CQ56 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Use1Q9CQ56 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Use1Q9CQ56 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Use1Q9CQ56 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Use1Q9CQ56 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Use1Q9CQ56 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Use1Q9CQ56 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.83■□□□□ 0.92
Use1Q9CQ56 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Use1Q9CQ56 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Use1Q9CQ56 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Use1Q9CQ56 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Use1Q9CQ56 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.81■□□□□ 0.92
Use1Q9CQ56 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Use1Q9CQ56 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Use1Q9CQ56 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Use1Q9CQ56 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Use1Q9CQ56 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Use1Q9CQ56 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Use1Q9CQ56 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms