Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav3-1Q5R1I8 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav3-1Q5R1I8 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav3-1Q5R1I8 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Trav3-1Q5R1I8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC15.27■□□□□ 0.04
Trav3-1Q5R1I8 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.27■□□□□ 0.03
Trav3-1Q5R1I8 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Trav3-1Q5R1I8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav3-1Q5R1I8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav3-1Q5R1I8 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav3-1Q5R1I8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav3-1Q5R1I8 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav3-1Q5R1I8 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC15.25■□□□□ 0.03
Trav3-1Q5R1I8 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav3-1Q5R1I8 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav3-1Q5R1I8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav3-1Q5R1I8 Gm4430-201ENSMUST00000192413 1943 ntBASIC15.24■□□□□ 0.03
Trav3-1Q5R1I8 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav3-1Q5R1I8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav3-1Q5R1I8 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav3-1Q5R1I8 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav3-1Q5R1I8 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav3-1Q5R1I8 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trav3-1Q5R1I8 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Trav3-1Q5R1I8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav3-1Q5R1I8 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Trav3-1Q5R1I8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav3-1Q5R1I8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav3-1Q5R1I8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Gm24109-201ENSMUST00000175489 103 ntBASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Trav3-1Q5R1I8 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav3-1Q5R1I8 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav3-1Q5R1I8 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav3-1Q5R1I8 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trav3-1Q5R1I8 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trav3-1Q5R1I8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trav3-1Q5R1I8 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav3-1Q5R1I8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav3-1Q5R1I8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 180.9 ms