Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
Scn2aA0A0J9YTW6 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn2aA0A0J9YTW6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Scn2aA0A0J9YTW6 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn2aA0A0J9YTW6 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn2aA0A0J9YTW6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn2aA0A0J9YTW6 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Scn2aA0A0J9YTW6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn2aA0A0J9YTW6 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.56■□□□□ 0.88
Scn2aA0A0J9YTW6 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Scn2aA0A0J9YTW6 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.55■□□□□ 0.88
Scn2aA0A0J9YTW6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn2aA0A0J9YTW6 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn2aA0A0J9YTW6 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn2aA0A0J9YTW6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn2aA0A0J9YTW6 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn2aA0A0J9YTW6 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn2aA0A0J9YTW6 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.5■□□□□ 0.87
Scn2aA0A0J9YTW6 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn2aA0A0J9YTW6 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn2aA0A0J9YTW6 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Scn2aA0A0J9YTW6 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn2aA0A0J9YTW6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn2aA0A0J9YTW6 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Scn2aA0A0J9YTW6 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.47■□□□□ 0.87
Scn2aA0A0J9YTW6 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn2aA0A0J9YTW6 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn2aA0A0J9YTW6 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn2aA0A0J9YTW6 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn2aA0A0J9YTW6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Scn2aA0A0J9YTW6 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Scn2aA0A0J9YTW6 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.45■□□□□ 0.86
Scn2aA0A0J9YTW6 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn2aA0A0J9YTW6 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn2aA0A0J9YTW6 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn2aA0A0J9YTW6 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn2aA0A0J9YTW6 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn2aA0A0J9YTW6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn2aA0A0J9YTW6 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn2aA0A0J9YTW6 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Scn2aA0A0J9YTW6 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn2aA0A0J9YTW6 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Scn2aA0A0J9YTW6 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.4■□□□□ 0.86
Scn2aA0A0J9YTW6 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms