Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdc40Q9DC48 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Cdc40Q9DC48 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdc40Q9DC48 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdc40Q9DC48 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdc40Q9DC48 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cdc40Q9DC48 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cdc40Q9DC48 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cdc40Q9DC48 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cdc40Q9DC48 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cdc40Q9DC48 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Cdc40Q9DC48 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cdc40Q9DC48 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.7■□□□□ 0.9
Cdc40Q9DC48 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
Cdc40Q9DC48 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cdc40Q9DC48 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdc40Q9DC48 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cdc40Q9DC48 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cdc40Q9DC48 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cdc40Q9DC48 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdc40Q9DC48 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Gm7332-201ENSMUST00000118351 454 ntBASIC20.66■□□□□ 0.9
Cdc40Q9DC48 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.66■□□□□ 0.9
Cdc40Q9DC48 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cdc40Q9DC48 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.65■□□□□ 0.9
Cdc40Q9DC48 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cdc40Q9DC48 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cdc40Q9DC48 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cdc40Q9DC48 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Cdc40Q9DC48 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Cdc40Q9DC48 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Gm9812-201ENSMUST00000061934 968 ntBASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdc40Q9DC48 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cdc40Q9DC48 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdc40Q9DC48 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.61■□□□□ 0.89
Cdc40Q9DC48 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdc40Q9DC48 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.61■□□□□ 0.89
Cdc40Q9DC48 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdc40Q9DC48 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdc40Q9DC48 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Cdc40Q9DC48 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms