Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Trim56Q80VI1 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.84■■□□□ 1.89
Trim56Q80VI1 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Trim56Q80VI1 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Trim56Q80VI1 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Trim56Q80VI1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim56Q80VI1 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Trim56Q80VI1 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC26.82■■□□□ 1.88
Trim56Q80VI1 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC26.82■■□□□ 1.88
Trim56Q80VI1 Cap2-205ENSMUST00000225824 1634 ntBASIC26.82■■□□□ 1.88
Trim56Q80VI1 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim56Q80VI1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC26.81■■□□□ 1.88
Trim56Q80VI1 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Trim56Q80VI1 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim56Q80VI1 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim56Q80VI1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Trim56Q80VI1 AC164433.2-201ENSMUST00000226346 1701 ntBASIC26.8■■□□□ 1.88
Trim56Q80VI1 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Trim56Q80VI1 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Trim56Q80VI1 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim56Q80VI1 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim56Q80VI1 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trim56Q80VI1 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC26.78■■□□□ 1.88
Trim56Q80VI1 Gm12366-201ENSMUST00000121722 873 ntBASIC26.78■■□□□ 1.88
Trim56Q80VI1 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC26.78■■□□□ 1.88
Trim56Q80VI1 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC26.78■■□□□ 1.88
Trim56Q80VI1 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC26.78■■□□□ 1.88
Trim56Q80VI1 Gm5786-201ENSMUST00000085368 882 ntBASIC26.78■■□□□ 1.88
Trim56Q80VI1 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
Trim56Q80VI1 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim56Q80VI1 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
Trim56Q80VI1 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Trim56Q80VI1 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC26.76■■□□□ 1.87
Trim56Q80VI1 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trim56Q80VI1 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trim56Q80VI1 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Trim56Q80VI1 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Trim56Q80VI1 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Trim56Q80VI1 Gm42699-201ENSMUST00000198104 1657 ntBASIC26.73■■□□□ 1.87
Trim56Q80VI1 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim56Q80VI1 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
Trim56Q80VI1 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Trim56Q80VI1 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Trim56Q80VI1 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC26.72■■□□□ 1.87
Trim56Q80VI1 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim56Q80VI1 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim56Q80VI1 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim56Q80VI1 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim56Q80VI1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim56Q80VI1 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Trim56Q80VI1 Gm14523-201ENSMUST00000117260 558 ntBASIC26.69■■□□□ 1.86
Trim56Q80VI1 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Trim56Q80VI1 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC26.69■■□□□ 1.86
Trim56Q80VI1 Gm44428-201ENSMUST00000204474 874 ntBASIC26.68■■□□□ 1.86
Trim56Q80VI1 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim56Q80VI1 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC26.67■■□□□ 1.86
Trim56Q80VI1 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trim56Q80VI1 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Trim56Q80VI1 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim56Q80VI1 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim56Q80VI1 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim56Q80VI1 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Trim56Q80VI1 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Trim56Q80VI1 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Trim56Q80VI1 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC26.64■■□□□ 1.86
Trim56Q80VI1 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC26.64■■□□□ 1.86
Trim56Q80VI1 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trim56Q80VI1 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC26.64■■□□□ 1.85
Trim56Q80VI1 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Trim56Q80VI1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.63■■□□□ 1.85
Trim56Q80VI1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim56Q80VI1 Gm7332-201ENSMUST00000118351 454 ntBASIC26.63■■□□□ 1.85
Trim56Q80VI1 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
Trim56Q80VI1 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Trim56Q80VI1 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Trim56Q80VI1 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim56Q80VI1 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC26.62■■□□□ 1.85
Trim56Q80VI1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Trim56Q80VI1 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms