Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.66■□□□□ 0.74
Col7a1Q63870 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col7a1Q63870 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col7a1Q63870 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.65■□□□□ 0.74
Col7a1Q63870 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Col7a1Q63870 Terc-201ENSMUST00000082862 423 ntBASIC19.65■□□□□ 0.74
Col7a1Q63870 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col7a1Q63870 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col7a1Q63870 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col7a1Q63870 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col7a1Q63870 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col7a1Q63870 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col7a1Q63870 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col7a1Q63870 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col7a1Q63870 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.63■□□□□ 0.73
Col7a1Q63870 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.63■□□□□ 0.73
Col7a1Q63870 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col7a1Q63870 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col7a1Q63870 Gm29257-201ENSMUST00000186115 639 ntBASIC19.62■□□□□ 0.73
Col7a1Q63870 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col7a1Q63870 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col7a1Q63870 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Col7a1Q63870 Gm37847-201ENSMUST00000192163 1497 ntBASIC19.62■□□□□ 0.73
Col7a1Q63870 Gm31748-201ENSMUST00000194938 1497 ntBASIC19.62■□□□□ 0.73
Col7a1Q63870 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col7a1Q63870 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col7a1Q63870 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col7a1Q63870 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col7a1Q63870 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Col7a1Q63870 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col7a1Q63870 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col7a1Q63870 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col7a1Q63870 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col7a1Q63870 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.59■□□□□ 0.73
Col7a1Q63870 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.59■□□□□ 0.73
Col7a1Q63870 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col7a1Q63870 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col7a1Q63870 Gm44428-201ENSMUST00000204474 874 ntBASIC19.58■□□□□ 0.73
Col7a1Q63870 Gm9847-201ENSMUST00000052528 599 ntBASIC19.58■□□□□ 0.73
Col7a1Q63870 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col7a1Q63870 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col7a1Q63870 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col7a1Q63870 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Col7a1Q63870 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col7a1Q63870 Gm8495-201ENSMUST00000188740 694 ntBASIC19.57■□□□□ 0.72
Col7a1Q63870 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col7a1Q63870 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col7a1Q63870 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col7a1Q63870 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.56■□□□□ 0.72
Col7a1Q63870 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.56■□□□□ 0.72
Col7a1Q63870 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col7a1Q63870 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col7a1Q63870 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col7a1Q63870 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col7a1Q63870 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.54■□□□□ 0.72
Col7a1Q63870 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col7a1Q63870 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Col7a1Q63870 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col7a1Q63870 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.53■□□□□ 0.72
Col7a1Q63870 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.53■□□□□ 0.72
Col7a1Q63870 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col7a1Q63870 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col7a1Q63870 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col7a1Q63870 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col7a1Q63870 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.52■□□□□ 0.72
Col7a1Q63870 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.52■□□□□ 0.72
Col7a1Q63870 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col7a1Q63870 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col7a1Q63870 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.52■□□□□ 0.71
Col7a1Q63870 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.52■□□□□ 0.71
Col7a1Q63870 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col7a1Q63870 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col7a1Q63870 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col7a1Q63870 Gm27454-201ENSMUST00000185090 204 ntBASIC19.5■□□□□ 0.71
Col7a1Q63870 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Col7a1Q63870 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col7a1Q63870 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col7a1Q63870 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Col7a1Q63870 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Col7a1Q63870 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.49■□□□□ 0.71
Col7a1Q63870 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.48■□□□□ 0.71
Col7a1Q63870 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col7a1Q63870 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col7a1Q63870 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col7a1Q63870 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col7a1Q63870 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col7a1Q63870 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.47■□□□□ 0.71
Col7a1Q63870 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col7a1Q63870 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col7a1Q63870 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col7a1Q63870 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col7a1Q63870 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col7a1Q63870 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col7a1Q63870 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 217 ms