Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clk3O35492 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clk3O35492 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clk3O35492 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clk3O35492 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clk3O35492 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clk3O35492 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clk3O35492 Gm37136-201ENSMUST00000194368 194 ntBASIC21.24■□□□□ 0.99
Clk3O35492 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Clk3O35492 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Clk3O35492 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Clk3O35492 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.23■□□□□ 0.99
Clk3O35492 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Clk3O35492 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Clk3O35492 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Clk3O35492 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.21■□□□□ 0.99
Clk3O35492 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk3O35492 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Clk3O35492 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.2■□□□□ 0.99
Clk3O35492 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.99
Clk3O35492 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clk3O35492 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
Clk3O35492 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clk3O35492 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clk3O35492 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.2■□□□□ 0.98
Clk3O35492 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clk3O35492 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clk3O35492 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Clk3O35492 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clk3O35492 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clk3O35492 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Clk3O35492 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Clk3O35492 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Clk3O35492 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.18■□□□□ 0.98
Clk3O35492 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk3O35492 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk3O35492 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk3O35492 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
Clk3O35492 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Clk3O35492 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clk3O35492 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Clk3O35492 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clk3O35492 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Clk3O35492 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clk3O35492 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clk3O35492 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clk3O35492 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Clk3O35492 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clk3O35492 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clk3O35492 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Clk3O35492 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Clk3O35492 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Clk3O35492 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Clk3O35492 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Clk3O35492 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clk3O35492 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clk3O35492 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clk3O35492 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clk3O35492 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clk3O35492 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clk3O35492 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clk3O35492 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.12■□□□□ 0.97
Clk3O35492 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk3O35492 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Clk3O35492 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Clk3O35492 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk3O35492 Gm4799-201ENSMUST00000095396 657 ntBASIC21.12■□□□□ 0.97
Clk3O35492 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk3O35492 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Clk3O35492 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.12■□□□□ 0.97
Clk3O35492 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.11■□□□□ 0.97
Clk3O35492 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.11■□□□□ 0.97
Clk3O35492 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clk3O35492 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clk3O35492 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Clk3O35492 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
Clk3O35492 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Clk3O35492 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clk3O35492 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clk3O35492 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clk3O35492 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clk3O35492 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.09■□□□□ 0.97
Clk3O35492 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Clk3O35492 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clk3O35492 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.09■□□□□ 0.97
Clk3O35492 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Clk3O35492 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.08■□□□□ 0.97
Clk3O35492 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.08■□□□□ 0.97
Clk3O35492 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms