Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cpsf4Q8BQZ5 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cpsf4Q8BQZ5 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cpsf4Q8BQZ5 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cpsf4Q8BQZ5 Gm37136-201ENSMUST00000194368 194 ntBASIC21.87■■□□□ 1.09
Cpsf4Q8BQZ5 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cpsf4Q8BQZ5 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cpsf4Q8BQZ5 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cpsf4Q8BQZ5 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cpsf4Q8BQZ5 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cpsf4Q8BQZ5 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.85■■□□□ 1.09
Cpsf4Q8BQZ5 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.85■■□□□ 1.09
Cpsf4Q8BQZ5 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.84■■□□□ 1.09
Cpsf4Q8BQZ5 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cpsf4Q8BQZ5 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cpsf4Q8BQZ5 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cpsf4Q8BQZ5 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cpsf4Q8BQZ5 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.83■■□□□ 1.09
Cpsf4Q8BQZ5 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cpsf4Q8BQZ5 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cpsf4Q8BQZ5 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Cpsf4Q8BQZ5 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.81■■□□□ 1.08
Cpsf4Q8BQZ5 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf4Q8BQZ5 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf4Q8BQZ5 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf4Q8BQZ5 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf4Q8BQZ5 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.8■■□□□ 1.08
Cpsf4Q8BQZ5 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.79■■□□□ 1.08
Cpsf4Q8BQZ5 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf4Q8BQZ5 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.79■■□□□ 1.08
Cpsf4Q8BQZ5 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf4Q8BQZ5 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Cpsf4Q8BQZ5 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.78■■□□□ 1.08
Cpsf4Q8BQZ5 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf4Q8BQZ5 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf4Q8BQZ5 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf4Q8BQZ5 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf4Q8BQZ5 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf4Q8BQZ5 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf4Q8BQZ5 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
Cpsf4Q8BQZ5 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Cpsf4Q8BQZ5 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf4Q8BQZ5 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.75■■□□□ 1.07
Cpsf4Q8BQZ5 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cpsf4Q8BQZ5 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Cpsf4Q8BQZ5 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf4Q8BQZ5 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf4Q8BQZ5 Gm6311-201ENSMUST00000073790 878 ntBASIC21.73■■□□□ 1.07
Cpsf4Q8BQZ5 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf4Q8BQZ5 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf4Q8BQZ5 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf4Q8BQZ5 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.72■■□□□ 1.07
Cpsf4Q8BQZ5 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf4Q8BQZ5 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf4Q8BQZ5 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Cpsf4Q8BQZ5 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf4Q8BQZ5 Gm4799-201ENSMUST00000095396 657 ntBASIC21.7■■□□□ 1.06
Cpsf4Q8BQZ5 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf4Q8BQZ5 Gm11175-201ENSMUST00000116172 543 ntBASIC21.69■■□□□ 1.06
Cpsf4Q8BQZ5 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.69■■□□□ 1.06
Cpsf4Q8BQZ5 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf4Q8BQZ5 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4Q8BQZ5 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Cpsf4Q8BQZ5 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf4Q8BQZ5 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.67■■□□□ 1.06
Cpsf4Q8BQZ5 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf4Q8BQZ5 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
Cpsf4Q8BQZ5 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms