Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm9910-201ENSMUST00000195385 1550 ntBASIC27.12■■□□□ 1.93
Trim56Q80VI1 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC27.12■■□□□ 1.93
Trim56Q80VI1 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Trim56Q80VI1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
Trim56Q80VI1 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
Trim56Q80VI1 AC153911.1-201ENSMUST00000220378 758 ntBASIC27.11■■□□□ 1.93
Trim56Q80VI1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Trim56Q80VI1 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trim56Q80VI1 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trim56Q80VI1 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trim56Q80VI1 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Trim56Q80VI1 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Trim56Q80VI1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Trim56Q80VI1 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Trim56Q80VI1 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Trim56Q80VI1 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Trim56Q80VI1 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Trim56Q80VI1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Trim56Q80VI1 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC27.07■■□□□ 1.92
Trim56Q80VI1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Trim56Q80VI1 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
Trim56Q80VI1 Terc-201ENSMUST00000082862 423 ntBASIC27.07■■□□□ 1.92
Trim56Q80VI1 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim56Q80VI1 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim56Q80VI1 Mir6538-201ENSMUST00000183713 110 ntBASIC27.06■■□□□ 1.92
Trim56Q80VI1 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Trim56Q80VI1 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim56Q80VI1 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim56Q80VI1 Gm11687-201ENSMUST00000118911 886 ntBASIC27.05■■□□□ 1.92
Trim56Q80VI1 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.05■■□□□ 1.92
Trim56Q80VI1 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC27.05■■□□□ 1.92
Trim56Q80VI1 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Trim56Q80VI1 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trim56Q80VI1 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Trim56Q80VI1 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trim56Q80VI1 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trim56Q80VI1 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trim56Q80VI1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC27.03■■□□□ 1.92
Trim56Q80VI1 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC27.03■■□□□ 1.92
Trim56Q80VI1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Trim56Q80VI1 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Trim56Q80VI1 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Trim56Q80VI1 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC27.02■■□□□ 1.92
Trim56Q80VI1 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
Trim56Q80VI1 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Trim56Q80VI1 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC27■■□□□ 1.91
Trim56Q80VI1 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC27■■□□□ 1.91
Trim56Q80VI1 AC151971.4-201ENSMUST00000214717 704 ntBASIC27■■□□□ 1.91
Trim56Q80VI1 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Trim56Q80VI1 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Trim56Q80VI1 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trim56Q80VI1 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Trim56Q80VI1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC26.99■■□□□ 1.91
Trim56Q80VI1 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trim56Q80VI1 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trim56Q80VI1 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Trim56Q80VI1 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
Trim56Q80VI1 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
Trim56Q80VI1 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
Trim56Q80VI1 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Trim56Q80VI1 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Trim56Q80VI1 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC26.97■■□□□ 1.91
Trim56Q80VI1 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
Trim56Q80VI1 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Trim56Q80VI1 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Trim56Q80VI1 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
Trim56Q80VI1 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Trim56Q80VI1 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Trim56Q80VI1 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trim56Q80VI1 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC26.94■■□□□ 1.9
Trim56Q80VI1 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trim56Q80VI1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.93■■□□□ 1.9
Trim56Q80VI1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Trim56Q80VI1 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Trim56Q80VI1 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Trim56Q80VI1 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Trim56Q80VI1 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
Trim56Q80VI1 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC26.91■■□□□ 1.9
Trim56Q80VI1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Trim56Q80VI1 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Trim56Q80VI1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
Trim56Q80VI1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Trim56Q80VI1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trim56Q80VI1 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trim56Q80VI1 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
Trim56Q80VI1 Gm27502-201ENSMUST00000183495 199 ntBASIC26.89■■□□□ 1.9
Trim56Q80VI1 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC26.89■■□□□ 1.9
Trim56Q80VI1 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
Trim56Q80VI1 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
Trim56Q80VI1 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Trim56Q80VI1 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Trim56Q80VI1 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trim56Q80VI1 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trim56Q80VI1 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trim56Q80VI1 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms