Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Six4Q61321 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Six4Q61321 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Six4Q61321 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Six4Q61321 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC23.1■■□□□ 1.29
Six4Q61321 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Six4Q61321 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Six4Q61321 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
Six4Q61321 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Six4Q61321 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Six4Q61321 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Six4Q61321 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Six4Q61321 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Six4Q61321 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Six4Q61321 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Six4Q61321 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Six4Q61321 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
Six4Q61321 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Six4Q61321 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Six4Q61321 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Six4Q61321 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC23.06■■□□□ 1.28
Six4Q61321 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
Six4Q61321 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Six4Q61321 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Six4Q61321 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Six4Q61321 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Six4Q61321 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Six4Q61321 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
Six4Q61321 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Six4Q61321 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Six4Q61321 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Six4Q61321 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Six4Q61321 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.03■■□□□ 1.28
Six4Q61321 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Six4Q61321 AC153911.1-201ENSMUST00000220378 758 ntBASIC23.02■■□□□ 1.28
Six4Q61321 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
Six4Q61321 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Six4Q61321 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Six4Q61321 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC23■■□□□ 1.27
Six4Q61321 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Six4Q61321 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.99■■□□□ 1.27
Six4Q61321 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Six4Q61321 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Six4Q61321 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC22.99■■□□□ 1.27
Six4Q61321 Gm11175-201ENSMUST00000116172 543 ntBASIC22.99■■□□□ 1.27
Six4Q61321 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Six4Q61321 Terc-201ENSMUST00000082862 423 ntBASIC22.99■■□□□ 1.27
Six4Q61321 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Six4Q61321 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Six4Q61321 Scarna2-201ENSMUST00000157560 414 ntBASIC22.98■■□□□ 1.27
Six4Q61321 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Six4Q61321 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
Six4Q61321 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Six4Q61321 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
Six4Q61321 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Six4Q61321 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.97■■□□□ 1.27
Six4Q61321 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Six4Q61321 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
Six4Q61321 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Six4Q61321 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Six4Q61321 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Six4Q61321 Gm9910-201ENSMUST00000195385 1550 ntBASIC22.96■■□□□ 1.27
Six4Q61321 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Six4Q61321 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Six4Q61321 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Six4Q61321 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Six4Q61321 Gm42699-201ENSMUST00000198104 1657 ntBASIC22.94■■□□□ 1.26
Six4Q61321 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Six4Q61321 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
Six4Q61321 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Six4Q61321 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Six4Q61321 Gm9806-201ENSMUST00000051080 552 ntBASIC22.93■■□□□ 1.26
Six4Q61321 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Six4Q61321 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Six4Q61321 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Six4Q61321 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Six4Q61321 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Gm16437-201ENSMUST00000025669 507 ntBASIC22.92■■□□□ 1.26
Six4Q61321 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Six4Q61321 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Six4Q61321 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Six4Q61321 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Six4Q61321 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC22.91■■□□□ 1.26
Six4Q61321 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Six4Q61321 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
Six4Q61321 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.9■■□□□ 1.26
Six4Q61321 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Six4Q61321 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Six4Q61321 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Six4Q61321 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
Six4Q61321 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
Six4Q61321 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC22.89■■□□□ 1.25
Six4Q61321 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Six4Q61321 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Six4Q61321 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms