Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim63Q38HM4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trim63Q38HM4 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
Trim63Q38HM4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim63Q38HM4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim63Q38HM4 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trim63Q38HM4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trim63Q38HM4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trim63Q38HM4 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim63Q38HM4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim63Q38HM4 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim63Q38HM4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim63Q38HM4 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim63Q38HM4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim63Q38HM4 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim63Q38HM4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim63Q38HM4 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim63Q38HM4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trim63Q38HM4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim63Q38HM4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim63Q38HM4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim63Q38HM4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trim63Q38HM4 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim63Q38HM4 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Trim63Q38HM4 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim63Q38HM4 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim63Q38HM4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim63Q38HM4 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim63Q38HM4 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim63Q38HM4 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trim63Q38HM4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Trim63Q38HM4 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim63Q38HM4 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
Trim63Q38HM4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim63Q38HM4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim63Q38HM4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim63Q38HM4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim63Q38HM4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Trim63Q38HM4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Trim63Q38HM4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim63Q38HM4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim63Q38HM4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim63Q38HM4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim63Q38HM4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim63Q38HM4 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.78■□□□□ 0.6
Trim63Q38HM4 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim63Q38HM4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim63Q38HM4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim63Q38HM4 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.76■□□□□ 0.59
Trim63Q38HM4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim63Q38HM4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim63Q38HM4 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim63Q38HM4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim63Q38HM4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim63Q38HM4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim63Q38HM4 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim63Q38HM4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms