Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn2aA0A0J9YTW6 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn2aA0A0J9YTW6 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn2aA0A0J9YTW6 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn2aA0A0J9YTW6 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn2aA0A0J9YTW6 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Scn2aA0A0J9YTW6 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.91■□□□□ 0.94
Scn2aA0A0J9YTW6 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn2aA0A0J9YTW6 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn2aA0A0J9YTW6 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn2aA0A0J9YTW6 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn2aA0A0J9YTW6 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn2aA0A0J9YTW6 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn2aA0A0J9YTW6 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn2aA0A0J9YTW6 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn2aA0A0J9YTW6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn2aA0A0J9YTW6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn2aA0A0J9YTW6 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn2aA0A0J9YTW6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scn2aA0A0J9YTW6 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.88■□□□□ 0.93
Scn2aA0A0J9YTW6 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Cap2-205ENSMUST00000225824 1634 ntBASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn2aA0A0J9YTW6 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Scn2aA0A0J9YTW6 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Scn2aA0A0J9YTW6 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn2aA0A0J9YTW6 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Gm12366-201ENSMUST00000121722 873 ntBASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Gm5786-201ENSMUST00000085368 882 ntBASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn2aA0A0J9YTW6 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Scn2aA0A0J9YTW6 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Scn2aA0A0J9YTW6 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Scn2aA0A0J9YTW6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.84■□□□□ 0.93
Scn2aA0A0J9YTW6 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.84■□□□□ 0.93
Scn2aA0A0J9YTW6 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn2aA0A0J9YTW6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn2aA0A0J9YTW6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn2aA0A0J9YTW6 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn2aA0A0J9YTW6 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn2aA0A0J9YTW6 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Scn2aA0A0J9YTW6 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.81■□□□□ 0.92
Scn2aA0A0J9YTW6 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Scn2aA0A0J9YTW6 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn2aA0A0J9YTW6 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn2aA0A0J9YTW6 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn2aA0A0J9YTW6 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Scn2aA0A0J9YTW6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn2aA0A0J9YTW6 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Scn2aA0A0J9YTW6 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn2aA0A0J9YTW6 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn2aA0A0J9YTW6 Gm7332-201ENSMUST00000118351 454 ntBASIC20.77■□□□□ 0.91
Scn2aA0A0J9YTW6 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn2aA0A0J9YTW6 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 97.5 ms