Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cdc40Q9DC48 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cdc40Q9DC48 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdc40Q9DC48 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Cdc40Q9DC48 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cdc40Q9DC48 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.14■□□□□ 0.97
Cdc40Q9DC48 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdc40Q9DC48 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.13■□□□□ 0.97
Cdc40Q9DC48 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdc40Q9DC48 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdc40Q9DC48 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdc40Q9DC48 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdc40Q9DC48 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Cdc40Q9DC48 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdc40Q9DC48 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdc40Q9DC48 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Cdc40Q9DC48 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdc40Q9DC48 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdc40Q9DC48 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Cdc40Q9DC48 Gm4799-201ENSMUST00000095396 657 ntBASIC21.11■□□□□ 0.97
Cdc40Q9DC48 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cdc40Q9DC48 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cdc40Q9DC48 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cdc40Q9DC48 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdc40Q9DC48 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdc40Q9DC48 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cdc40Q9DC48 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Cdc40Q9DC48 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdc40Q9DC48 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cdc40Q9DC48 Cap2-205ENSMUST00000225824 1634 ntBASIC21.07■□□□□ 0.96
Cdc40Q9DC48 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdc40Q9DC48 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cdc40Q9DC48 Scarna2-201ENSMUST00000157560 414 ntBASIC21.06■□□□□ 0.96
Cdc40Q9DC48 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdc40Q9DC48 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdc40Q9DC48 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdc40Q9DC48 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Cdc40Q9DC48 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Cdc40Q9DC48 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.05■□□□□ 0.96
Cdc40Q9DC48 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdc40Q9DC48 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdc40Q9DC48 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Cdc40Q9DC48 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Cdc40Q9DC48 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdc40Q9DC48 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdc40Q9DC48 Gm11687-201ENSMUST00000118911 886 ntBASIC21.02■□□□□ 0.96
Cdc40Q9DC48 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.02■□□□□ 0.96
Cdc40Q9DC48 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.02■□□□□ 0.96
Cdc40Q9DC48 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Cdc40Q9DC48 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Cdc40Q9DC48 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdc40Q9DC48 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdc40Q9DC48 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.01■□□□□ 0.95
Cdc40Q9DC48 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdc40Q9DC48 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cdc40Q9DC48 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Cdc40Q9DC48 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21■□□□□ 0.95
Cdc40Q9DC48 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cdc40Q9DC48 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Mir3960-201ENSMUST00000198213 73 ntBASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Gm9806-201ENSMUST00000051080 552 ntBASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdc40Q9DC48 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Gm37136-201ENSMUST00000194368 194 ntBASIC20.98■□□□□ 0.95
Cdc40Q9DC48 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Gm16437-201ENSMUST00000025669 507 ntBASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdc40Q9DC48 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cdc40Q9DC48 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cdc40Q9DC48 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cdc40Q9DC48 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cdc40Q9DC48 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cdc40Q9DC48 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cdc40Q9DC48 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cdc40Q9DC48 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms