Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Syne4Q8CII8 Gm15039-201ENSMUST00000118914 875 ntBASIC26.71■■□□□ 1.87
Syne4Q8CII8 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Syne4Q8CII8 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Syne4Q8CII8 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC26.69■■□□□ 1.86
Syne4Q8CII8 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Syne4Q8CII8 Terc-201ENSMUST00000082862 423 ntBASIC26.69■■□□□ 1.86
Syne4Q8CII8 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Syne4Q8CII8 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.68■■□□□ 1.86
Syne4Q8CII8 AC153911.1-201ENSMUST00000220378 758 ntBASIC26.68■■□□□ 1.86
Syne4Q8CII8 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Syne4Q8CII8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Syne4Q8CII8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
Syne4Q8CII8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Syne4Q8CII8 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC26.66■■□□□ 1.86
Syne4Q8CII8 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC26.66■■□□□ 1.86
Syne4Q8CII8 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Syne4Q8CII8 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Syne4Q8CII8 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Syne4Q8CII8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Syne4Q8CII8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Syne4Q8CII8 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
Syne4Q8CII8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.64■■□□□ 1.86
Syne4Q8CII8 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Syne4Q8CII8 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Syne4Q8CII8 Zxda-201ENSMUST00000117281 2621 ntBASIC26.62■■□□□ 1.85
Syne4Q8CII8 Gm15546-201ENSMUST00000122095 826 ntBASIC26.62■■□□□ 1.85
Syne4Q8CII8 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Syne4Q8CII8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Syne4Q8CII8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Syne4Q8CII8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Syne4Q8CII8 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Syne4Q8CII8 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
Syne4Q8CII8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
Syne4Q8CII8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.84
Syne4Q8CII8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.58■■□□□ 1.84
Syne4Q8CII8 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
Syne4Q8CII8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Syne4Q8CII8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Syne4Q8CII8 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Syne4Q8CII8 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
Syne4Q8CII8 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Syne4Q8CII8 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
Syne4Q8CII8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Syne4Q8CII8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Syne4Q8CII8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Syne4Q8CII8 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Syne4Q8CII8 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Syne4Q8CII8 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC26.52■■□□□ 1.84
Syne4Q8CII8 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Syne4Q8CII8 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Syne4Q8CII8 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.51■■□□□ 1.83
Syne4Q8CII8 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
Syne4Q8CII8 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC26.5■■□□□ 1.83
Syne4Q8CII8 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
Syne4Q8CII8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.5■■□□□ 1.83
Syne4Q8CII8 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Syne4Q8CII8 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Syne4Q8CII8 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Syne4Q8CII8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Syne4Q8CII8 Gm5522-201ENSMUST00000189483 1242 ntBASIC26.48■■□□□ 1.83
Syne4Q8CII8 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Syne4Q8CII8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Syne4Q8CII8 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Syne4Q8CII8 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Syne4Q8CII8 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Syne4Q8CII8 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Syne4Q8CII8 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
Syne4Q8CII8 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Syne4Q8CII8 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Syne4Q8CII8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Syne4Q8CII8 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.45■■□□□ 1.82
Syne4Q8CII8 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.45■■□□□ 1.82
Syne4Q8CII8 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.45■■□□□ 1.82
Syne4Q8CII8 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC26.45■■□□□ 1.82
Syne4Q8CII8 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC26.44■■□□□ 1.82
Syne4Q8CII8 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC26.44■■□□□ 1.82
Syne4Q8CII8 Gm44428-201ENSMUST00000204474 874 ntBASIC26.44■■□□□ 1.82
Syne4Q8CII8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Syne4Q8CII8 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Syne4Q8CII8 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Syne4Q8CII8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
Syne4Q8CII8 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Syne4Q8CII8 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Syne4Q8CII8 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Syne4Q8CII8 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC26.41■■□□□ 1.82
Syne4Q8CII8 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Syne4Q8CII8 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Syne4Q8CII8 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Syne4Q8CII8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC26.4■■□□□ 1.82
Syne4Q8CII8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC26.4■■□□□ 1.82
Syne4Q8CII8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC26.4■■□□□ 1.82
Syne4Q8CII8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Syne4Q8CII8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Syne4Q8CII8 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.39■■□□□ 1.82
Syne4Q8CII8 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC26.39■■□□□ 1.82
Syne4Q8CII8 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC26.39■■□□□ 1.82
Syne4Q8CII8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Syne4Q8CII8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Syne4Q8CII8 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms