Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Brf1Q8CFK2 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Brf1Q8CFK2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Gm4799-201ENSMUST00000095396 657 ntBASIC27.81■■■□□ 2.04
Brf1Q8CFK2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Gm4419-202ENSMUST00000226239 1431 ntBASIC27.81■■■□□ 2.04
Brf1Q8CFK2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
Brf1Q8CFK2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Brf1Q8CFK2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
Brf1Q8CFK2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Brf1Q8CFK2 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Brf1Q8CFK2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
Brf1Q8CFK2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
Brf1Q8CFK2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
Brf1Q8CFK2 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Brf1Q8CFK2 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Brf1Q8CFK2 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Brf1Q8CFK2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
Brf1Q8CFK2 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.03
Brf1Q8CFK2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
Brf1Q8CFK2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Brf1Q8CFK2 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC27.75■■■□□ 2.03
Brf1Q8CFK2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC27.75■■■□□ 2.03
Brf1Q8CFK2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC27.75■■■□□ 2.03
Brf1Q8CFK2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Brf1Q8CFK2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Brf1Q8CFK2 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
Brf1Q8CFK2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
Brf1Q8CFK2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Brf1Q8CFK2 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Brf1Q8CFK2 Gm13889-201ENSMUST00000099689 1386 ntBASIC27.73■■■□□ 2.03
Brf1Q8CFK2 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Brf1Q8CFK2 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
Brf1Q8CFK2 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
Brf1Q8CFK2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Brf1Q8CFK2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Brf1Q8CFK2 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
Brf1Q8CFK2 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Brf1Q8CFK2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC27.7■■■□□ 2.02
Brf1Q8CFK2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
Brf1Q8CFK2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC27.69■■■□□ 2.02
Brf1Q8CFK2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Brf1Q8CFK2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Brf1Q8CFK2 Mir3960-201ENSMUST00000198213 73 ntBASIC27.68■■■□□ 2.02
Brf1Q8CFK2 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Brf1Q8CFK2 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Brf1Q8CFK2 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Brf1Q8CFK2 Gm45364-201ENSMUST00000210883 159 ntBASIC27.66■■■□□ 2.02
Brf1Q8CFK2 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Brf1Q8CFK2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
Brf1Q8CFK2 AC154454.1-201ENSMUST00000225253 216 ntBASIC27.64■■■□□ 2.02
Brf1Q8CFK2 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
Brf1Q8CFK2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC27.62■■■□□ 2.01
Brf1Q8CFK2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.01
Brf1Q8CFK2 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC27.61■■■□□ 2.01
Brf1Q8CFK2 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC27.61■■■□□ 2.01
Brf1Q8CFK2 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Brf1Q8CFK2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC27.59■■■□□ 2.01
Brf1Q8CFK2 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Brf1Q8CFK2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Brf1Q8CFK2 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC27.59■■■□□ 2.01
Brf1Q8CFK2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Brf1Q8CFK2 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC27.57■■■□□ 2
Brf1Q8CFK2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC27.57■■■□□ 2
Brf1Q8CFK2 Gm12818-201ENSMUST00000117562 1349 ntBASIC27.57■■■□□ 2
Brf1Q8CFK2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Brf1Q8CFK2 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Brf1Q8CFK2 Gm5987-201ENSMUST00000196433 1151 ntBASIC27.56■■■□□ 2
Brf1Q8CFK2 Gm9812-201ENSMUST00000061934 968 ntBASIC27.56■■■□□ 2
Brf1Q8CFK2 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC27.56■■■□□ 2
Brf1Q8CFK2 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC27.56■■■□□ 2
Brf1Q8CFK2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC27.55■■■□□ 2
Brf1Q8CFK2 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Brf1Q8CFK2 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Brf1Q8CFK2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC27.55■■■□□ 2
Brf1Q8CFK2 Gm6311-201ENSMUST00000073790 878 ntBASIC27.55■■■□□ 2
Brf1Q8CFK2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC27.55■■■□□ 2
Brf1Q8CFK2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC27.55■■■□□ 2
Brf1Q8CFK2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC27.54■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms